U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Endomembrane protein 70 protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833470, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Endomembrane protein 70 protein family
    Primary source
    TAIR:AT5G35160
    Locus tag
    AT5G35160
    See related
    Araport:AT5G35160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T25C13.40; T25C13_40
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (13414629..13417445)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene adenylate kinase family protein Neighboring gene ENHANCED DISEASE RESISTANCE protein (DUF1336)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
    2. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    3. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    4. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001203491.2
    NM_001344097.1
    NM_122907.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi medial cisterna HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in endosome HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 
    located_in trans-Golgi network HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Endomembrane protein 70 protein family
    NP_001190420.1
    • Endomembrane protein 70 protein family; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT4G12650.1).
    NP_198366.2
    • Endomembrane protein 70 protein family; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT4G12650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      13414629..13417445
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344096.1 → NP_001332755.1  Endomembrane protein 70 protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L424, Q9FYQ8
      UniProtKB/TrEMBL
      A0A178UDT0, A0A5S9Y874, A0A7G2FCD9
      Conserved Domains (2) summary
      PTZ00189
      Location:30 → 59
      PTZ00189; 60S ribosomal protein L21; Provisional
      pfam02990
      Location:55 → 610
      EMP70; Endomembrane protein 70

    2. NM_001203491.2 → NP_001190420.1  Endomembrane protein 70 protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190420.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L424, Q9FYQ8
      UniProtKB/TrEMBL
      A0A178UDT0, A0A5S9Y874, A0A7G2FCD9
      Conserved Domains (2) summary
      PTZ00189
      Location:30 → 59
      PTZ00189; 60S ribosomal protein L21; Provisional
      pfam02990
      Location:55 → 610
      EMP70; Endomembrane protein 70

    3. NM_001344097.1 → NP_001332754.1  Endomembrane protein 70 protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L424, Q9FYQ8
      UniProtKB/TrEMBL
      A0A178UDT0, A0A5S9Y874, A0A7G2FCD9
      Conserved Domains (2) summary
      PTZ00189
      Location:30 → 59
      PTZ00189; 60S ribosomal protein L21; Provisional
      pfam02990
      Location:55 → 610
      EMP70; Endomembrane protein 70

    4. NM_122907.4 → NP_198366.2  Endomembrane protein 70 protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198366.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FCD9, F4JYB8
      Conserved Domains (1) summary
      pfam02990
      Location:42 → 582
      EMP70; Endomembrane protein 70
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FYQ8.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools