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    Translation elongation factor EF1A/initiation factor IF2gamma family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816387, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Translation elongation factor EF1A/initiation factor IF2gamma family protein
    Primary source
    TAIR:AT2G18720
    Locus tag
    AT2G18720
    See related
    Araport:AT2G18720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSF3.10; MSF3_10
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (8114785..8117085, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene trehalose phosphatase/synthase 11 Neighboring gene SECY homolog 1 Neighboring gene uncharacterized protein Neighboring gene diacylglycerol kinase 3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within translation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Translation elongation factor EF1A/initiation factor IF2gamma family protein
    NP_179462.2
    • Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: serine-type peptidase activity, translation factor activity, nucleic acid binding, GTP binding, GTPase activity; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Peptidase S26A, signal peptidase I, serine active site (InterPro:IPR019756), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT4G18330.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8114785..8117085 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127428.2 → NP_179462.2  Translation elongation factor EF1A/initiation factor IF2gamma family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179462.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTC3, A0A384LFM7, A0A5S9WZ85, F4IRF5
      Conserved Domains (1) summary
      PTZ00327
      Location:9 → 461
      PTZ00327; eukaryotic translation initiation factor 2 gamma subunit; Provisional

    2. NM_001335603.1 → NP_001324883.1  Translation elongation factor EF1A/initiation factor IF2gamma family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTC3, A0A384LFM7, A0A5S9WZ85, F4IRF5
      Conserved Domains (1) summary
      PTZ00327
      Location:9 → 461
      PTZ00327; eukaryotic translation initiation factor 2 gamma subunit; Provisional

    3. NM_001335604.1 → NP_001324884.1  Translation elongation factor EF1A/initiation factor IF2gamma family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1G6, Q9ZV47
    Nucleotide Protein
    Heading Accession and Version

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