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    Six-hairpin glycosidases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839048, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Six-hairpin glycosidases superfamily protein
    Primary source
    TAIR:AT1G24320
    Locus tag
    AT1G24320
    See related
    Araport:AT1G24320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3I6.26; F3I6_26
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    20
    Sequence:
    Chromosome: 1; NC_003070.9 (8626315..8631027, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene AAA-type ATPase family protein Neighboring gene ncRNA Neighboring gene GYF domain-containing protein Neighboring gene nuclear pore complex protein Neighboring gene ARM repeat superfamily protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene Acid phosphatase/vanadium-dependent haloperoxidase-related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332645.1
    NM_102278.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables Glc3Man9GlcNAc2 oligosaccharide glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in oligosaccharide metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Six-hairpin glycosidases superfamily protein
    NP_173842.2
    • Six-hairpin glycosidases superfamily protein; FUNCTIONS IN: mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity; INVOLVED IN: oligosaccharide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: glucosidase 1 (TAIR:AT1G67490.1); Has 471 Blast hits to 459 proteins in 200 species: Archae - 2; Bacteria - 99; Metazoa - 113; Fungi - 132; Plants - 45; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8626315..8631027 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102278.6 → NP_173842.2  Six-hairpin glycosidases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173842.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48699, Q84M89
      UniProtKB/TrEMBL
      A0A178W935, A0A5S9VV69, A0A7G2DZ72
      Conserved Domains (2) summary
      pfam03200
      Location:285 → 784
      Glyco_hydro_63; Glycosyl hydrolase family 63 C-terminal domain
      pfam16923
      Location:46 → 200
      Glyco_hydro_63N; Glycosyl hydrolase family 63 N-terminal domain

    2. NM_001332645.1 → NP_001321649.1  Six-hairpin glycosidases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARK2, A0A654ECQ4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84M89.1

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