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    pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816742, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pentatricopeptide (PPR) repeat-containing protein
    Primary source
    TAIR:AT2G22070
    Locus tag
    AT2G22070
    See related
    Araport:AT2G22070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16B14.8; T16B14_8
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (9383397..9386266)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RALF-like 15 Neighboring gene galactose oxidase/kelch repeat protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NM_127776.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pentatricopeptide (PPR) repeat-containing protein
    NP_179798.1
    • pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9383397..9386266
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127776.3 → NP_179798.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179798.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SHZ8
      UniProtKB/TrEMBL
      A0A178VVV0, A0A5S9X0G2, A0A654EUZ5
      Conserved Domains (3) summary
      PLN03077
      Location:36 → 784
      PLN03077; Protein ECB2; Provisional
      sd00006
      Location:586 → 612
      TPR; TPR repeat [structural motif]
      sd00004
      Location:482 → 509
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SHZ8.1

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