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    RBL5 RHOMBOID-like protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841690, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RBL5
    Official Full Name
    RHOMBOID-like protein 5
    Primary source
    TAIR:AT1G52580
    Locus tag
    AT1G52580
    See related
    Araport:AT1G52580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRBL5; F6D8.20; F6D8_20; RHOMBOID-like protein 5
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    Genomic context

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    See RBL5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (19587603..19589052)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cytochrome P450 family protein Neighboring gene phospholipase D alpha 2 Neighboring gene ncRNA Neighboring gene Putative thiol-disulfide oxidoreductase DCC Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene GRF zinc finger protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_104136.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RHOMBOID-like protein 5
    NP_175667.1
    • RHOMBOID-like protein 5 (RBL5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 1 (TAIR:AT2G29050.1); Has 6054 Blast hits to 6053 proteins in 1760 species: Archae - 140; Bacteria - 3757; Metazoa - 520; Fungi - 179; Plants - 346; Viruses - 0; Other Eukaryotes - 1112 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19587603..19589052
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104136.3 → NP_175667.1  RHOMBOID-like protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175667.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SSR0
      UniProtKB/TrEMBL
      A0A5S9WP15, A0A654EJJ7
      Conserved Domains (1) summary
      pfam01694
      Location:100 → 242
      Rhomboid; Rhomboid family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SSR0.1

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