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    SR34 RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839262, updated on 8-Dec-2024

    Summary

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    Official Symbol
    SR34
    Official Full Name
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Primary source
    TAIR:AT1G02840
    Locus tag
    AT1G02840
    See related
    Araport:AT1G02840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    At-SR34; ATSRP34; F22D16.16; F22D16_16; Serine/Arginine-Rich Protein Splicing Factor 34; SR1; SRP34
    Summary
    SR34/SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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    Genomic context

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    See SR34 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (626639..629993)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Late embryogenesis abundant 3 (LEA3) family protein Neighboring gene Ribosomal L22e protein family Neighboring gene beta glucosidase 11 Neighboring gene SPX (SYG1/Pho81/XPR1) domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes. Lopato S, et al. Genes Dev, 1999 Apr 15. PMID 10215626, Free PMC Article
    2. ATP, phosphorylation and transcription regulate the mobility of plant splicing factors. Ali GS, et al. J Cell Sci, 2006 Sep 1. PMID 16895966
    3. Tissue-specific expression and dynamic organization of SR splicing factors in Arabidopsis. Fang Y, et al. Mol Biol Cell, 2004 Jun. PMID 15034145, Free PMC Article
    4. An Arabidopsis SNF1-related protein kinase, AtSR1, interacts with a calcium-binding protein, AtCBL2, of which transcripts respond to light. Nozawa A, et al. Plant Cell Physiol, 2001 Sep. PMID 11577192
    5. The C3H-type zinc finger protein GDS1/C3H42 is a nuclear-speckle-localized protein that is essential for normal growth and development in Arabidopsis. Kim DW, et al. Plant Sci, 2016 Sep. PMID 27457991

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data show that the mobility of SR45 and SR1/SRp34 is dependent on ATP, phosphorylation and transcription.
      Title: ATP, phosphorylation and transcription regulate the mobility of plant splicing factors.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001331357.1
    NM_001331358.1
    NM_001331359.1
    NM_180602.2
    NM_180603.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in interchromatin granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding (RRM/RBD/RNP motifs) family protein
    NP_001318908.1
    • SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2); Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12; Bacteria - 1352; Metazoa - 20795; Fungi - 3692; Plants - 3807; Viruses - 567; Other Eukaryotes - 4906 (source: NCBI BLink).
    NP_850933.1
    • SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2); Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12; Bacteria - 1352; Metazoa - 20795; Fungi - 3692; Plants - 3807; Viruses - 567; Other Eukaryotes - 4906 (source: NCBI BLink).
    NP_850934.1
    • SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2); Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12; Bacteria - 1352; Metazoa - 20795; Fungi - 3692; Plants - 3807; Viruses - 567; Other Eukaryotes - 4906 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      626639..629993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180602.2 → NP_850933.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850933.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22314, O22315, Q39201, Q564E1, Q8L7P1
      UniProtKB/TrEMBL
      A0A178W1M4, A0A654EBA2, Q9SPI1
      Conserved Domains (2) summary
      cd12599
      Location:8 → 79
      RRM1_SF2_plant_like; RNA recognition motif 1 in plant pre-mRNA-splicing factor SF2 and similar proteins
      cd12602
      Location:119 → 194
      RRM2_SF2_plant_like; RNA recognition motif 2 in plant pre-mRNA-splicing factor SF2 and similar proteins

    2. NM_001331358.1 → NP_001321307.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1Q4, Q9SPI5
      Conserved Domains (3) summary
      COG0724
      Location:1 → 80
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12599
      Location:8 → 79
      RRM1_SF2_plant_like; RNA recognition motif 1 in plant pre-mRNA-splicing factor SF2 and similar proteins
      cd12602
      Location:119 → 194
      RRM2_SF2_plant_like; RNA recognition motif 2 in plant pre-mRNA-splicing factor SF2 and similar proteins

    3. NM_001331357.1 → NP_001318908.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1Q4, Q9SPI5
      Conserved Domains (3) summary
      COG0724
      Location:1 → 80
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12599
      Location:8 → 79
      RRM1_SF2_plant_like; RNA recognition motif 1 in plant pre-mRNA-splicing factor SF2 and similar proteins
      cd12602
      Location:119 → 194
      RRM2_SF2_plant_like; RNA recognition motif 2 in plant pre-mRNA-splicing factor SF2 and similar proteins

    4. NM_001331359.1 → NP_001321308.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1Q4, Q9SPI5
      Conserved Domains (3) summary
      COG0724
      Location:1 → 80
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12599
      Location:8 → 79
      RRM1_SF2_plant_like; RNA recognition motif 1 in plant pre-mRNA-splicing factor SF2 and similar proteins
      cd12602
      Location:119 → 194
      RRM2_SF2_plant_like; RNA recognition motif 2 in plant pre-mRNA-splicing factor SF2 and similar proteins

    5. NM_180603.1 → NP_850934.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850934.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9SPI2
      Conserved Domains (3) summary
      COG0724
      Location:1 → 80
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12599
      Location:8 → 79
      RRM1_SF2_plant_like; RNA recognition motif 1 in plant pre-mRNA-splicing factor SF2 and similar proteins
      cd12602
      Location:119 → 194
      RRM2_SF2_plant_like; RNA recognition motif 2 in plant pre-mRNA-splicing factor SF2 and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22315.1

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