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    SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841463, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
    Primary source
    TAIR:AT1G50410
    Locus tag
    AT1G50410
    See related
    Araport:AT1G50410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CHR28; chromatin remodeling 28; F11F12.23; F11F12_23; FRG2; SNF2-RING-HELICASE?LIKE 2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (18672132..18677652)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pfkB-like carbohydrate kinase family protein Neighboring gene Eukaryotic porin family protein Neighboring gene scarecrow-like 3 Neighboring gene Ergosterol biosynthesis ERG4/ERG24 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. Groth M, et al. Proc Natl Acad Sci U S A, 2014 Dec 9. PMID 25425661, Free PMC Article
    2. SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis. Han YF, et al. Cell Res, 2014 Dec. PMID 25420628, Free PMC Article
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_103924.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gene silencing by siRNA-directed DNA methylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
    NP_564568.1
    • SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT3G20010.1); Has 25748 Blast hits to 15874 proteins in 1868 species: Archae - 87; Bacteria - 8136; Metazoa - 6127; Fungi - 5385; Plants - 2378; Viruses - 150; Other Eukaryotes - 3485 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18672132..18677652
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333433.1 → NP_001323325.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94BR5, Q9LPR7, Q9SX56
      UniProtKB/TrEMBL
      A0A654EMA9, A0A7G2E168
      Conserved Domains (4) summary
      COG0553
      Location:178 → 979
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00162
      Location:679 → 719
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cd18008
      Location:226 → 564
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins
      cl17238
      Location:678 → 723
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. NM_001333434.1 → NP_001323326.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94BR5, Q9LPR7, Q9SX56
      UniProtKB/TrEMBL
      A0A654EMA9, A0A7G2E168
      Conserved Domains (4) summary
      COG0553
      Location:178 → 979
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00162
      Location:679 → 719
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cd18008
      Location:226 → 564
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins
      cl17238
      Location:678 → 723
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. NM_001333435.1 → NP_001323324.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WIV7, A0A1P8AWQ0

    4. NM_103924.2 → NP_564568.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564568.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94BR5, Q9LPR7, Q9SX56
      UniProtKB/TrEMBL
      A0A654EMA9, A0A7G2E168
      Conserved Domains (4) summary
      COG0553
      Location:178 → 979
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00162
      Location:679 → 719
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cd18008
      Location:226 → 564
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins
      cl17238
      Location:678 → 723
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94BR5.1

    Gene LinkOut

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