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    RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843123, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Primary source
    TAIR:AT1G67950
    Locus tag
    AT1G67950
    See related
    Araport:AT1G67950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23K23.20; T23K23_20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (25478713..25480580, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Golgi transport complex protein-like protein Neighboring gene non-intrinsic ABC protein 3 Neighboring gene ncRNA Neighboring gene POLLEN DEFECTIVE IN GUIDANCE-like protein Neighboring gene heat shock transcription factor A8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Phytophthora capsici Effector Targets ACD11 Binding Partners that Regulate ROS-Mediated Defense Response in Arabidopsis. Li Q, et al. Mol Plant, 2019 Apr 1. PMID 30703564
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_105465.3
    NM_179527.3
    NM_179528.2
    NM_179529.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of plant-type hypersensitive response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding (RRM/RBD/RNP motifs) family protein
    NP_564915.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 376 Blast hits to 376 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 87; Plants - 239; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
    NP_849858.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 376 Blast hits to 376 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 87; Plants - 239; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
    NP_849859.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 374 Blast hits to 374 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 87; Plants - 239; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    NP_849860.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 252 Blast hits to 252 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 15; Plants - 228; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25478713..25480580 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105465.3 → NP_564915.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564915.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJ97, A0A654EM26, Q8LAY5
      Conserved Domains (1) summary
      PLN03120
      Location:25 → 269
      PLN03120; nucleic acid binding protein; Provisional

    2. NM_179528.2 → NP_849859.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849859.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJ97, F4HVJ0
      Conserved Domains (2) summary
      PLN03120
      Location:25 → 270
      PLN03120; nucleic acid binding protein; Provisional
      cl17169
      Location:30 → 259
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. NM_179527.3 → NP_849858.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849858.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJ97, A0A178WL90, F4HVJ1
      Conserved Domains (2) summary
      PLN03120
      Location:26 → 270
      PLN03120; nucleic acid binding protein; Provisional
      cl17169
      Location:31 → 259
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. NM_179529.2 → NP_849860.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849860.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HVJ2, Q9C9W1
      Conserved Domains (2) summary
      PLN03120
      Location:1 → 210
      PLN03120; nucleic acid binding protein; Provisional
      cl17169
      Location:11 → 199
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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