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    Ribosomal L18p/L5e family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821816, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal L18p/L5e family protein
    Primary source
    TAIR:AT3G22450
    Locus tag
    AT3G22450
    See related
    Araport:AT3G22450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (7962307..7963516)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA recognition motif XS domain protein Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene FRIGIDA-like protein Neighboring gene O-acetylserine (thiol) lyase (OAS-TL) isoform A2 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene prefoldin 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rerouting of ribosomal proteins into splicing in plant organelles. Wang C, et al. Proc Natl Acad Sci U S A, 2020 Nov 24. PMID 33168708, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338587.1
    NM_113144.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ribosomal L18p/L5e family protein
    NP_001319618.1
    • Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome, intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT1G08845.1); Has 315 Blast hits to 315 proteins in 79 species: Archae - 0; Bacteria - 79; Metazoa - 42; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7962307..7963516
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338587.1 → NP_001319618.1  Ribosomal L18p/L5e family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKK4, Q9LJA1

    2. NM_113144.2 → NP_188884.1  Ribosomal L18p/L5e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188884.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKK4, Q9LJA1
      Conserved Domains (2) summary
      cd00432
      Location:196 → 290
      Ribosomal_L18_L5e; Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA ...
      cl11266
      Location:107 → 186
      EssA; WXG100 protein secretion system (Wss), protein EssA
    Nucleotide Protein
    Heading Accession and Version

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