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    Lojap-related protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820478, updated on 18-Sep-2024

    Summary

    Official Full Name
    Lojap-related protein
    Primary source
    TAIR:AT3G12930
    Locus tag
    AT3G12930
    See related
    Araport:AT3G12930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (4128334..4129956)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene Trypsin family protein Neighboring gene SAUR-like auxin-responsive protein family

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_112129.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
     
    located_in chloroplast nucleoid IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of plastid-encoded plastid RNA polymerase complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 

    General protein information

    Preferred Names
    Lojap-related protein
    NP_566439.1
    • Lojap-related protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Iojap-related protein (InterPro:IPR004394); Has 4153 Blast hits to 4153 proteins in 1667 species: Archae - 0; Bacteria - 3137; Metazoa - 32; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 916 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4128334..4129956
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112129.2NP_566439.1  Lojap-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566439.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LAC1, Q9LDY9
      UniProtKB/TrEMBL
      A0A178VAW6
      Conserved Domains (1) summary
      pfam02410
      Location:126220
      RsfS; Ribosomal silencing factor during starvation