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    NF-YB5 nuclear factor Y, subunit B5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819393, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NF-YB5
    Official Full Name
    nuclear factor Y, subunit B5
    Primary source
    TAIR:AT2G47810
    Locus tag
    AT2G47810
    See related
    Araport:AT2G47810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''nuclear factor Y; F17A22.20; nuclear factor Y; subunit B5; subunit B5''
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    Genomic context

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    See NF-YB5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (19582658..19583618, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Rubber elongation factor protein (REF) Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene multidrug resistance-associated protein 4 Neighboring gene arginine-glutamic acid dipeptide repeat protein Neighboring gene Cation efflux family protein Neighboring gene putative conserved protein ycf60

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactions and CCAAT-binding of Arabidopsis thaliana NF-Y subunits. Calvenzani V, et al. PLoS One, 2012. PMID 22912760, Free PMC Article
    2. Studies on differential nuclear translocation mechanism and assembly of the three subunits of the Arabidopsis thaliana transcription factor NF-Y. Hackenberg D, et al. Mol Plant, 2012 Jul. PMID 22199235
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_130348.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear factor Y, subunit B5
    NP_182302.1
    • ''nuclear factor Y, subunit B5'' (NF-YB5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: sepal, male gametophyte, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B3 (TAIR:AT4G14540.1); Has 1476 Blast hits to 1476 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 483; Fungi - 353; Plants - 526; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19582658..19583618 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130348.3 → NP_182302.1  nuclear factor Y, subunit B5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182302.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82248
      UniProtKB/TrEMBL
      A0A178VUG0, A0A5S9X7X4, A0A654F2V3
      Conserved Domains (1) summary
      pfam00808
      Location:54 → 119
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82248.1

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