U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    HO4 heme oxygenase 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842199, updated on 18-Sep-2024

    Summary

    Official Symbol
    HO4
    Official Full Name
    heme oxygenase 4
    Primary source
    TAIR:AT1G58300
    Locus tag
    AT1G58300
    See related
    Araport:AT1G58300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19C14.8; F19C14_8; heme oxygenase 4
    Summary
    Encodes a member (HO4) of the heme oxygenase family.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See HO4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (21627758..21630118, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Phosphoglycerate mutase family protein Neighboring gene Glutamyl-tRNA reductase family protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene PLAC8 family protein

    Pathways from PubChem

    General gene information

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables heme binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables heme oxygenase (decyclizing) activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in heme oxidation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    heme oxygenase 4
    NP_176126.1
    • heme oxygenase 4 (HO4); FUNCTIONS IN: heme oxygenase (decyclizing) activity, oxidoreductase activity, heme binding; INVOLVED IN: oxidation reduction, heme oxidation; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), Haem oxygenase-like (InterPro:IPR016053), Haem oxygenase (decyclizing), plant (InterPro:IPR016951); BEST Arabidopsis thaliana protein match is: heme oxygenase 3 (TAIR:AT1G69720.1); Has 273 Blast hits to 273 proteins in 64 species: Archae - 0; Bacteria - 70; Metazoa - 13; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21627758..21630118 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104610.2NP_176126.1  heme oxygenase 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176126.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MED2, Q94FX2, Q9FUN4, Q9LQC0
      UniProtKB/TrEMBL
      A0A178WN67, A0A5S9WSC7, A0A654EKV5
      Conserved Domains (1) summary
      cd19165
      Location:78281
      HemeO; heme oxygenase in eukaryotes and some bacteria