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    hypothetical protein (DUF1639) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825212, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF1639)
    Primary source
    TAIR:AT3G60410
    Locus tag
    AT3G60410
    See related
    Araport:AT3G60410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (22331427..22333652)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene phosphoglycerate mutase family protein Neighboring gene phosphoglycerate mutase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001035824.3
    NM_115905.4
    NM_202736.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF1639)
    NP_001030901.2
    • Protein of unknown function (DUF1639); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G25370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_567099.2
    • Protein of unknown function (DUF1639); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G25370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974465.2
    • Protein of unknown function (DUF1639); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G25370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22331427..22333652
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115905.4 → NP_567099.2  hypothetical protein (DUF1639) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567099.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VBY2, A0A654FJI3, Q9C5E4
      Conserved Domains (1) summary
      pfam07797
      Location:269 → 318
      DUF1639; Protein of unknown function (DUF1639)

    2. NM_202736.3 → NP_974465.2  hypothetical protein (DUF1639) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974465.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VBY2, A0A654FJI3, Q9C5E4
      Conserved Domains (1) summary
      pfam07797
      Location:269 → 318
      DUF1639; Protein of unknown function (DUF1639)

    3. NM_001035824.3 → NP_001030901.2  hypothetical protein (DUF1639) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030901.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VBY2, A0A654FJI3, Q9C5E4
      Conserved Domains (1) summary
      pfam07797
      Location:269 → 318
      DUF1639; Protein of unknown function (DUF1639)
    Nucleotide Protein
    Heading Accession and Version

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