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    LOG6 lysine decarboxylase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831890, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LOG6
    Official Full Name
    lysine decarboxylase family protein
    Primary source
    TAIR:AT5G03270
    Locus tag
    AT5G03270
    See related
    Araport:AT5G03270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15A17.300; F15A17_300; LONELY GUY 6
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    Genomic context

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    See LOG6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (781725..784368)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene polyubiquitin 3 Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene laccase 11 Neighboring gene NRAMP metal ion transporter family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis. Kuroha T, et al. Plant Cell, 2009 Oct. PMID 19837870, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Results strongly suggest that the direct activation pathway via LOGs plays a pivotal role in regulating cytokinin activity during normal growth and development in Arabidopsis.
      Title: Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    lysine decarboxylase family protein
    NP_001318465.1
    • lysine decarboxylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lysine biosynthetic process via diaminopimelate; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 4676 Blast hits to 4675 proteins in 1444 species: Archae - 14; Bacteria - 3212; Metazoa - 10; Fungi - 132; Plants - 382; Viruses - 0; Other Eukaryotes - 926 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      781725..784368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342694.1 → NP_001318465.1  lysine decarboxylase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KF91, Q9FYM7, Q9LYV8
      UniProtKB/TrEMBL
      A0A178UQW2, A0A5S9Y0Z0, A0A7G2F585
      Conserved Domains (1) summary
      cl22881
      Location:19 → 196
      DNA_processg_A; DNA recombination-mediator protein A

    2. NM_001342695.1 → NP_001331279.1  lysine decarboxylase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDD2, A0A7G2F585
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYV8.2

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