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    GAMMA CAL1 gamma carbonic anhydrase like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836470, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GAMMA CAL1
    Official Full Name
    gamma carbonic anhydrase like 1
    Primary source
    TAIR:AT5G63510
    Locus tag
    AT5G63510
    See related
    Araport:AT5G63510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    gamma carbonic anhydrase like 1; MLE2.14; MLE2_14
    Summary
    Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.
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    Genomic context

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    See GAMMA CAL1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (25423967..25425871)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein Neighboring gene ncRNA Neighboring gene transmembrane protein, putative (DUF 3339) Neighboring gene F-box/LRR protein Neighboring gene farnesylated protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The γ-carbonic anhydrase subcomplex of mitochondrial complex I is essential for development and important for photomorphogenesis of Arabidopsis. Wang Q, et al. Plant Physiol, 2012 Nov. PMID 22991283, Free PMC Article
    2. The genetic and physiological analysis of late-flowering phenotype of T-DNA insertion mutants of AtCAL1 and AtCAL2 in Arabidopsis. Zhang J, et al. Mol Biol Rep, 2012 Feb. PMID 21695426
    3. Gamma carbonic anhydrase like complex interact with plant mitochondrial complex I. Perales M, et al. Plant Mol Biol, 2004 Dec. PMID 15821992
    4. Carbonic anhydrase subunits form a matrix-exposed domain attached to the membrane arm of mitochondrial complex I in plants. Sunderhaus S, et al. J Biol Chem, 2006 Mar 10. PMID 16407270
    5. Proteomic approach to identify novel mitochondrial proteins in Arabidopsis. Kruft V, et al. Plant Physiol, 2001 Dec. PMID 11743114, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A genetic study of the genes gammaCAL1 and gammaCAL2 that encode two subunits of the gammaCA subcomplex of mitochondrial complex I, is reported.
      Title: The γ-carbonic anhydrase subcomplex of mitochondrial complex I is essential for development and important for photomorphogenesis of Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125746.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbonate dehydratase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within photorespiration TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salt stress IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid HDA PubMed 
    part_of respiratory chain complex I HDA PubMed 
    part_of respiratory chain complex I IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gamma carbonic anhydrase like 1
    NP_001190608.1
    • gamma carbonic anhydrase like 1 (GAMMA CAL1); CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase-like 2 (TAIR:AT3G48680.1).
    NP_201156.1
    • gamma carbonic anhydrase like 1 (GAMMA CAL1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: response to salt stress, photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase-like 2 (TAIR:AT3G48680.1); Has 6342 Blast hits to 6315 proteins in 1761 species: Archae - 154; Bacteria - 4172; Metazoa - 13; Fungi - 12; Plants - 165; Viruses - 0; Other Eukaryotes - 1826 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25423967..25425871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203679.1 → NP_001190608.1  gamma carbonic anhydrase like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190608.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VI68, A0A5S9XJ47, F4KAQ8
      Conserved Domains (2) summary
      cd04645
      Location:67 → 251
      LbH_gamma_CA_like; Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
      PLN02472
      Location:2 → 279
      PLN02472; uncharacterized protein

    2. NM_125746.4 → NP_201156.1  gamma carbonic anhydrase like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201156.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBM1, Q93XY3, Q9FMV1
      UniProtKB/TrEMBL
      A0A178UAU0, A0A178VI68, A0A5S9XJ47, A0A5S9YGP8
      Conserved Domains (1) summary
      PLN02472
      Location:2 → 252
      PLN02472; uncharacterized protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FMV1.1

    Gene LinkOut

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