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    Peroxidase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836771, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Peroxidase superfamily protein
    Primary source
    TAIR:AT5G66390
    Locus tag
    AT5G66390
    See related
    Araport:AT5G66390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K1F13.4; K1F13_4; PEROXIDASE 72; PRX72
    Summary
    Encodes a peroxidase that is involved in lignin biosynthesis.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (26515905..26517599, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene metal ion-binding protein Neighboring gene folate transporter 1 Neighboring gene Dehydrin family protein Neighboring gene thioredoxin domain PLP3B-like protein Neighboring gene TIM-barrel signal transduction protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Suppression of Arabidopsis peroxidase 72 alters cell wall and phenylpropanoid metabolism. Fernández-Pérez F, et al. Plant Sci, 2015 Oct. PMID 26398803
    2. Bioinformatic and functional characterization of the basic peroxidase 72 from Arabidopsis thaliana involved in lignin biosynthesis. Herrero J, et al. Planta, 2013 Jun. PMID 23508663
    3. Laccases and Peroxidases Co-Localize in Lignified Secondary Cell Walls throughout Stem Development. Hoffmann N, et al. Plant Physiol, 2020 Oct. PMID 32699027, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Laccases and Peroxidases Co-Localize in Lignified Secondary Cell Walls throughout Stem Development.
      Title: Laccases and Peroxidases Co-Localize in Lignified Secondary Cell Walls throughout Stem Development.
    2. Knock out mutant disruption of AtPrx72 causes thinner secondary walls in interfascicular fibres but not in the xylem of the stem. AtPrx72 function seems to be particularly important when lignification prevails over elongation processes.
      Title: Suppression of Arabidopsis peroxidase 72 alters cell wall and phenylpropanoid metabolism.
    3. The results suggest an important role of AtPrx72 in lignin biosynthesis.[Atprx72]
      Title: Bioinformatic and functional characterization of the basic peroxidase 72 from Arabidopsis thaliana involved in lignin biosynthesis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_126037.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lactoperoxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lignin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Peroxidase superfamily protein
    NP_201440.1
    • Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G50990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26515905..26517599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126037.5 → NP_201440.1  Peroxidase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201440.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q43736, Q9FJZ9
      UniProtKB/TrEMBL
      A0A5S9YHS9, Q0WT45
      Conserved Domains (2) summary
      cd00693
      Location:33 → 332
      secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
      PLN03030
      Location:37 → 333
      PLN03030; cationic peroxidase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FJZ9.1

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