Glycosyl hydrolase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

Official Full Name: Glycosyl hydrolase superfamily protein
Primary source: TAIR:AT4G16260
Locus tag: AT4G16260
See related: Araport:AT4G16260
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: DL4170C; FCAALL.386
Summary: Encodes a putative beta-1,3-endoglucanase that interacts with the 30C02 cyst nematode effector. May play a role in host defense.
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Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Go to nucleotide: Graphics FASTA GenBank

The interaction of the novel 30C02 cyst nematode effector protein with AT4G16260 suppressed host defence to promote parasitism.
Title: The interaction of the novel 30C02 cyst nematode effector protein with a plant β-1,3-endoglucanase may suppress host defence to promote parasitism.

Submit: New GeneRIF Correction

NM_117722.7

Function	Evidence Code	Pubs
enables glucan endo-1,3-beta-D-glucosidase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in carbohydrate metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within defense response to fungus	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within defense response to nematode	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in mitochondrion	ISM Inferred from Sequence Model more info
located_in plant-type cell wall	HDA more info	PubMed
located_in plant-type vacuole	HDA more info	PubMed
located_in secretory vesicle	HDA more info	PubMed

NP_193361.4

Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

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The following sections contain reference sequences that belong to a specific genome build. Explain