U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    HAD superfamily, subfamily IIIB acid phosphatase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818579, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    HAD superfamily, subfamily IIIB acid phosphatase
    Primary source
    TAIR:AT2G39920
    Locus tag
    AT2G39920
    See related
    Araport:AT2G39920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28M21.8; T28M21_8
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (16663017..16664539, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene proline transporter 1 Neighboring gene GATA type zinc finger transcription factor family protein Neighboring gene ARM repeat superfamily protein Neighboring gene isoamylase 1 Neighboring gene ncRNA Neighboring gene RNI-like superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001202787.1
    NM_001202788.1
    NM_001336806.1
    NM_129550.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    HAD superfamily, subfamily IIIB acid phosphatase
    NP_001189716.1
    • HAD superfamily, subfamily IIIB acid phosphatase; FUNCTIONS IN: acid phosphatase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1).
    NP_001189717.1
    • HAD superfamily, subfamily IIIB acid phosphatase; FUNCTIONS IN: acid phosphatase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1).
    NP_565918.1
    • HAD superfamily, subfamily IIIB acid phosphatase; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1); Has 356 Blast hits to 355 proteins in 40 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 323; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16663017..16664539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202788.1 → NP_001189717.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189717.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04195
      UniProtKB/TrEMBL
      A0A5S9X5J4, A0A654F0E7
      Conserved Domains (1) summary
      cl21460
      Location:114 → 276
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    2. NM_001202787.1 → NP_001189716.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189716.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUL9, F4IG20
      Conserved Domains (1) summary
      cd07535
      Location:114 → 275
      HAD_VSP; vegetative storage proteins similar to soybean VSPalpha and VSPbeta proteins; belongs to the haloacid dehalogenase-like superfamily

    3. NM_129550.4 → NP_565918.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565918.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04195
      UniProtKB/TrEMBL
      A0A5S9X5J4, A0A654F0E7
      Conserved Domains (1) summary
      cl21460
      Location:114 → 276
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    4. NM_001336806.1 → NP_001323609.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04195
      UniProtKB/TrEMBL
      A0A5S9X5J4, A0A654F0E7
      Conserved Domains (1) summary
      cl21460
      Location:114 → 276
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04195.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.