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    GPI inositol-deacylase C, putative (DUF1218) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817788, updated on 18-Sep-2024

    Summary

    Official Full Name
    GPI inositol-deacylase C, putative (DUF1218)
    Primary source
    TAIR:AT2G32280
    Locus tag
    AT2G32280
    See related
    Araport:AT2G32280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T32F6.20; T32F6_20; VASCULATURE COMPLEXITY AND CONNECTIVITY; VCC
    Summary
    Encodes a member of a plant-specific gene family that is required for embryo provasculature development. The gene product regulates vascular network complexity and connectivity in cotyledons.
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    Genomic context

    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (13712928..13715208)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene beta-amylase 6 Neighboring gene miscRNA Neighboring gene EXS (ERD1/XPR1/SYG1) family protein

    Interactions

    General gene information

    NM_001336384.1
    NM_128787.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    colocalizes_with endoplasmic reticulum PubMed 

    General protein information

    Preferred Names
    GPI inositol-deacylase C, putative (DUF1218)
    NP_180787.1
    • Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G21310.1); Has 170 Blast hits to 169 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13712928..13715208
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128787.4 → NP_180787.1  GPI inositol-deacylase C, putative (DUF1218) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180787.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VR11, Q9ZV57
      UniProtKB/TrEMBL
      A0A384LLA3
      Conserved Domains (1) summary
      pfam06749
      Location:58 → 146
      DUF1218; Protein of unknown function (DUF1218)
    2. NM_001336384.1 → NP_001323429.1  GPI inositol-deacylase C, putative (DUF1218) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VR11, Q9ZV57
      UniProtKB/TrEMBL
      A0A384LLA3
      Conserved Domains (1) summary
      pfam06749
      Location:58 → 146
      DUF1218; Protein of unknown function (DUF1218)
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