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    Ubiquitin carboxyl-terminal hydrolase-related protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817311, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin carboxyl-terminal hydrolase-related protein
    Primary source
    TAIR:AT2G27650
    Locus tag
    AT2G27650
    See related
    Araport:AT2G27650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15K20.25; F15K20_25
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    12
    Sequence:
    Chromosome: 2; NC_003071.7 (11792825..11797712, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene AAA-type ATPase family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene hypothetical protein (Domain of unknown function DUF220)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_128324.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome HDA PubMed 

    General protein information

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    Preferred Names
    Ubiquitin carboxyl-terminal hydrolase-related protein
    NP_180333.2
    • Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT2G27630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11792825..11797712 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128324.3 → NP_180333.2  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180333.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X214, A0A654EWR5, F4IGQ3
      Conserved Domains (3) summary
      pfam00443
      Location:806 → 1099
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam04780
      Location:195 → 655
      DUF629; Protein of unknown function (DUF629)
      pfam04781
      Location:18 → 125
      DUF627; Protein of unknown function (DUF627)
    Nucleotide Protein
    Heading Accession and Version

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