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    SPT2 chromatin protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816802, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SPT2 chromatin protein
    Primary source
    TAIR:AT2G22720
    Locus tag
    AT2G22720
    See related
    Araport:AT2G22720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9I22.16; T9I22_16
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (9657339..9660803)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene zinc ion binding protein Neighboring gene pseudo Neighboring gene Major facilitator superfamily protein Neighboring gene SU(VAR)3-9 homolog 6 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001335813.1
    NM_127837.4
    NM_201783.2
    NM_201784.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SPT2 chromatin protein
    NP_565542.1
    • SPT2 chromatin protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: SPT2 chromatin protein (TAIR:AT4G37860.1); Has 20732 Blast hits to 11501 proteins in 824 species: Archae - 15; Bacteria - 2039; Metazoa - 8268; Fungi - 3444; Plants - 709; Viruses - 228; Other Eukaryotes - 6029 (source: NCBI BLink).
    NP_973512.1
    • SPT2 chromatin protein; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: SPT2 chromatin protein (TAIR:AT4G37860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973513.1
    • SPT2 chromatin protein; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: SPT2 chromatin protein (TAIR:AT4G37860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9657339..9660803
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335811.1 → NP_001323682.1  SPT2 chromatin protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EWT1, Q0WW54

    2. NM_001335812.1 → NP_001323683.1  SPT2 chromatin protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXS7, A0A654EWT1

    3. NM_201783.2 → NP_973512.1  SPT2 chromatin protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973512.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EWT1, F4IKF3
      Conserved Domains (1) summary
      pfam08243
      Location:567 → 645
      SPT2; SPT2 chromatin protein

    4. NM_201784.3 → NP_973513.1  SPT2 chromatin protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973513.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EWT1, Q0WW54
      Conserved Domains (1) summary
      pfam08243
      Location:464 → 542
      SPT2; SPT2 chromatin protein

    5. NM_001335813.1 → NP_001323681.1  SPT2 chromatin protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXS7, A0A654EWT1

    6. NM_127837.4 → NP_565542.1  SPT2 chromatin protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565542.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q93ZD0, Q9ZQ42
      Conserved Domains (1) summary
      pfam08243
      Location:235 → 313
      SPT2; SPT2 chromatin protein
    Nucleotide Protein
    Heading Accession and Version

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