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    Putative membrane lipoprotein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837577, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Putative membrane lipoprotein
    Primary source
    TAIR:AT1G10380
    Locus tag
    AT1G10380
    See related
    Araport:AT1G10380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14N23.27
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (3400554..3402420)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DNAJ heat shock family protein Neighboring gene glutathione S-transferase TAU 18 Neighboring gene Glutathione S-transferase family protein Neighboring gene Vps51/Vps67 family (components of vesicular transport) protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100912.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables polysaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Putative membrane lipoprotein
    NP_563868.1
    • Putative membrane lipoprotein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 280 Blast hits to 279 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3400554..3402420
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331899.1 → NP_001322436.1  Putative membrane lipoprotein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATZ8, A0A5S9TN33

    2. NM_100912.3 → NP_563868.1  Putative membrane lipoprotein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563868.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9TN33, A0A654EA29, Q93ZB0
      Conserved Domains (2) summary
      pfam13947
      Location:29 → 91
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      pfam14380
      Location:211 → 263
      WAK_assoc; Wall-associated receptor kinase C-terminal
    Nucleotide Protein
    Heading Accession and Version

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