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    MC6 metacaspase 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844270, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MC6
    Official Full Name
    metacaspase 6
    Primary source
    TAIR:AT1G79320
    Locus tag
    AT1G79320
    See related
    Araport:AT1G79320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMC6; AtMCP2c; MCP2c; metacaspase 2c; metacaspase 6; YUP8H12R.6; YUP8H12R_6
    Summary
    Encodes a putative metacaspase. Arabidopsis contains three type I MCP genes (MCP1a-c) and six type II MCP genes (MCP2a#Aeif): AtMCP1a/At5g64240, AtMCP1b/At1g02170, AtMCP1c/At4g25110, AtMCP2a/At1g79310, AtMCP2b/At1g79330, AtMCP2c/At1g79320, AtMCP2d/At1g79340, AtMCP2e/At1g16420, AtMCP2f/At5g04200.
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    Genomic context

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    See MC6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (29836644..29838140)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Lys Neighboring gene metacaspase 7 Neighboring gene miscRNA Neighboring gene metacaspase 5 Neighboring gene metacaspase 4 Neighboring gene RING/FYVE/PHD zinc finger superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_106580.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    metacaspase 6
    NP_178050.1
    • metacaspase 6 (MC6); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 5 (TAIR:AT1G79330.1); Has 1177 Blast hits to 1175 proteins in 293 species: Archae - 4; Bacteria - 354; Metazoa - 0; Fungi - 270; Plants - 306; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29836644..29838140
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106580.2 → NP_178050.1  metacaspase 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178050.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64519
      UniProtKB/TrEMBL
      A0A178W108, A0A5S9WVQ7
      Conserved Domains (1) summary
      pfam00656
      Location:3 → 359
      Peptidase_C14; Caspase domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64519.1

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