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    ALIS5 ALA-interacting subunit 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844283, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ALIS5
    Official Full Name
    ALA-interacting subunit 5
    Primary source
    TAIR:AT1G79450
    Locus tag
    AT1G79450
    See related
    Araport:AT1G79450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ALA-interacting subunit 5; T8K14.13; T8K14_13
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    Genomic context

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    See ALIS5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (29887616..29890211)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Homeodomain-like superfamily protein Neighboring gene aldehyde dehydrogenase 5F1 Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_106593.4
    NM_202446.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    ALA-interacting subunit 5
    NP_565210.1
    • ALA-interacting subunit 5 (ALIS5); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, plasma membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (TAIR:AT1G16360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974175.1
    • ALA-interacting subunit 5 (ALIS5); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, plasma membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (TAIR:AT1G16360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29887616..29890211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106593.4 → NP_565210.1  ALA-interacting subunit 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565210.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L8W0, Q9SAK3
      UniProtKB/TrEMBL
      A0A178WMM5, A0A5S9WVR3
      Conserved Domains (1) summary
      pfam03381
      Location:70 → 329
      CDC50; LEM3 (ligand-effect modulator 3) family / CDC50 family

    2. NM_202446.1 → NP_974175.1  ALA-interacting subunit 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974175.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L8W0
      Conserved Domains (1) summary
      pfam03381
      Location:8 → 263
      CDC50; LEM3 (ligand-effect modulator 3) family / CDC50 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L8W0.1

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