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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839402, updated on 18-Sep-2024

    Summary

    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT1G04840
    Locus tag
    AT1G04840
    See related
    Araport:AT1G04840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13M7.17; F13M7_17
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (1362227..1365027, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tubulin alpha-4 chain Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene ubiquitin-associated (UBA)/TS-N domain-containing protein Neighboring gene ubiquitin-specific protease 2

    General gene information

    NM_100362.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_171976.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G74630.1); Has 39151 Blast hits to 14409 proteins in 285 species: Archae - 0; Bacteria - 8; Metazoa - 167; Fungi - 139; Plants - 38292; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1362227..1365027 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100362.2NP_171976.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171976.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9MAT2
      UniProtKB/TrEMBL
      A0A178WCW3, A0A5S9SMC4, A0A654EBW1
      Conserved Domains (2) summary
      PLN03077
      Location:27663
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:198225
      PPR; PPR repeat [structural motif]