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    GRAS family transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837266, updated on 10-Oct-2024

    Summary

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    Official Full Name
    GRAS family transcription factor
    Primary source
    TAIR:AT1G07520
    Locus tag
    AT1G07520
    See related
    Araport:AT1G07520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22G5.41; F22G5_41
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (2309534..2312385, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ROTUNDIFOLIA like 3 Neighboring gene uncharacterized protein Neighboring gene FTSH protease 10 Neighboring gene SCARECROW-like 14 Neighboring gene TRF-like 2 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NM_100626.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GRAS family transcription factor
    NP_172232.1
    • GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G29065.1); Has 2426 Blast hits to 2385 proteins in 289 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 2411; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2309534..2312385 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331704.1 → NP_001322138.1  GRAS family transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AT66

    2. NM_001331705.1 → NP_001322139.1  GRAS family transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5Z6, A0A1P8AT25, A0A384L9U8, A0A654E965, A0A7G2DTP8
      Conserved Domains (1) summary
      pfam03514
      Location:316 → 693
      GRAS; GRAS domain family

    3. NM_001331706.1 → NP_001322137.1  GRAS family transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AT66

    4. NM_100626.2 → NP_172232.1  GRAS family transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172232.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0SUT7, F4HQP5, Q3EDH0
      UniProtKB/TrEMBL
      A0A654E965, A0A7G2DTP8
      Conserved Domains (1) summary
      pfam03514
      Location:315 → 692
      GRAS; GRAS domain family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3EDH0.3

    Gene LinkOut

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