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    EMB2777 Sas10/U3 ribonucleoprotein (Utp) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818967, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB2777
    Official Full Name
    Sas10/U3 ribonucleoprotein (Utp) family protein
    Primary source
    TAIR:AT2G43650
    Locus tag
    AT2G43650
    See related
    Araport:AT2G43650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 2777; F18O19.24
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    Genomic context

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    See EMB2777 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Sequence:
    Chromosome: 2; NC_003071.7 (18099236..18103438)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene nucleusenvelope protein Neighboring gene Signal recognition particle, SRP9/SRP14 subunit Neighboring gene ncRNA Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual Role of a SAS10/C1D Family Protein in Ribosomal RNA Gene Expression and Processing Is Essential for Reproduction in Arabidopsis thaliana. Chen YC, et al. PLoS Genet, 2016 Oct. PMID 27792779, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. THAL contributes to both transcription and processing pathways of rRNA biogenesis and thereby impacts the organization of the nucleolus and reproductive development. [THAL]
      Title: Dual Role of a SAS10/C1D Family Protein in Ribosomal RNA Gene Expression and Processing Is Essential for Reproduction in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_180066.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Sas10/U3 ribonucleoprotein (Utp) family protein
    NP_850397.1
    • EMBRYO DEFECTIVE 2777 (EMB2777); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: gene silencing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146), Something about silencing protein 10 (Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28230.2); Has 14657 Blast hits to 10395 proteins in 729 species: Archae - 127; Bacteria - 2247; Metazoa - 4743; Fungi - 2020; Plants - 661; Viruses - 159; Other Eukaryotes - 4700 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18099236..18103438
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180066.3 → NP_850397.1  Sas10/U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850397.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22838, Q0WVP9, Q8L3P4
      UniProtKB/TrEMBL
      A0A5S9X6R4
      Conserved Domains (2) summary
      pfam04000
      Location:243 → 322
      Sas10_Utp3; Sas10/Utp3/C1D family
      pfam09368
      Location:581 → 654
      Sas10; Sas10 C-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L3P4.1

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