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    Uncharacterized protein family UPF0090 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843252, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Uncharacterized protein family UPF0090
    Primary source
    TAIR:AT1G69210
    Locus tag
    AT1G69210
    See related
    Araport:AT1G69210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4N2.17; F4N2_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (26018438..26020058, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Dihydropterin pyrophosphokinase / Dihydropteroate synthase Neighboring gene fructokinase-like protein Neighboring gene Protein kinase superfamily protein Neighboring gene SPIRAL1-like2 Neighboring gene methyl esterase 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001124100.1
    NM_105588.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in ribosomal small subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Uncharacterized protein family UPF0090
    NP_001117572.1
    • Uncharacterised protein family UPF0090; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0090 (InterPro:IPR003728); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family UPF0090 (TAIR:AT1G77122.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_564954.1
    • Uncharacterised protein family UPF0090; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0090 (InterPro:IPR003728); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family UPF0090 (TAIR:AT1G77122.1); Has 169 Blast hits to 169 proteins in 64 species: Archae - 0; Bacteria - 102; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26018438..26020058 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105588.3 → NP_564954.1  Uncharacterized protein family UPF0090 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564954.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W528, A0A654EMD0, Q94JV0
      Conserved Domains (1) summary
      cl00259
      Location:147 → 305
      Sm_like; Sm and related proteins

    2. NM_001124100.1 → NP_001117572.1  Uncharacterized protein family UPF0090 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117572.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H552
    Nucleotide Protein
    Heading Accession and Version

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