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    C2H2 type zinc finger transcription factor family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841413, updated on 18-Sep-2024

    Summary

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    Official Full Name
    C2H2 type zinc finger transcription factor family
    Primary source
    TAIR:AT1G49900
    Locus tag
    AT1G49900
    See related
    Araport:AT1G49900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T18C15.3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (18473908..18477643, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Erv1/Alr family protein Neighboring gene QWRF motif protein (DUF566) Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene MuDR family transposase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    C2H2 type zinc finger transcription factor family
    NP_175412.1
    • C2H2 type zinc finger transcription factor family; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc-finger protein 2 (TAIR:AT3G19580.2); Has 13177 Blast hits to 8629 proteins in 489 species: Archae - 12; Bacteria - 972; Metazoa - 5177; Fungi - 1539; Plants - 2420; Viruses - 128; Other Eukaryotes - 2929 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18473908..18477643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103877.3 → NP_175412.1  C2H2 type zinc finger transcription factor family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175412.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EH26, Q9C538
      Conserved Domains (2) summary
      sd00017
      Location:752 → 772
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13912
      Location:244 → 269
      zf-C2H2_6; C2H2-type zinc finger
    Nucleotide Protein
    Heading Accession and Version

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