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    MYB3R-3 myb domain protein 3r-3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820094, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB3R-3
    Official Full Name
    myb domain protein 3r-3
    Primary source
    TAIR:AT3G09370
    Locus tag
    AT3G09370
    See related
    Araport:AT3G09370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB3R3; myb domain protein 3r-3; myb domain protein 3R3
    Summary
    putative c-myb-like transcription factor (MYB3R3) mRNA
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    Genomic context

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    See MYB3R-3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (2879353..2882396)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Fes1A Neighboring gene Cyclin/Brf1-like TBP-binding protein Neighboring gene miscRNA Neighboring gene MIP18 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage. Chen P, et al. Nat Commun, 2017 Sep 21. PMID 28935922, Free PMC Article
    2. The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Yanhui C, et al. Plant Mol Biol, 2006 Jan. PMID 16463103
    3. Transcriptional repression by MYB3R proteins regulates plant organ growth. Kobayashi K, et al. EMBO J, 2015 Aug 4. PMID 26069325, Free PMC Article
    4. DREAM complex suppresses DNA methylation maintenance genes and precludes DNA hypermethylation. Ning YQ, et al. Nat Plants, 2020 Aug. PMID 32661276
    5. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084658.2
    NM_001337814.1
    NM_111771.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of cell population proliferation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to ethylene IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salicylic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DRM complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 3r-3
    NP_001078127.1
    • myb domain protein 3r-3 (MYB3R-3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-5 (TAIR:AT5G02320.2); Has 14047 Blast hits to 8583 proteins in 559 species: Archae - 0; Bacteria - 0; Metazoa - 1217; Fungi - 1118; Plants - 8582; Viruses - 6; Other Eukaryotes - 3124 (source: NCBI BLink).
    NP_566350.1
    • myb domain protein 3r-3 (MYB3R-3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-5 (TAIR:AT5G02320.2); Has 12681 Blast hits to 8608 proteins in 562 species: Archae - 0; Bacteria - 0; Metazoa - 1169; Fungi - 1136; Plants - 7404; Viruses - 4; Other Eukaryotes - 2968 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2879353..2882396
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084658.2 → NP_001078127.1  myb domain protein 3r-3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078127.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XAQ0
      Conserved Domains (2) summary
      smart00717
      Location:135 → 183
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:135 → 181
      Myb_DNA-binding; Myb-like DNA-binding domain

    2. NM_111771.4 → NP_566350.1  myb domain protein 3r-3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566350.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IZX3, Q8H1P9, Q94CC4, Q9M652, Q9SR26
      UniProtKB/TrEMBL
      A0A5S9XAQ0
      Conserved Domains (2) summary
      pfam13921
      Location:81 → 141
      Myb_DNA-bind_6; Myb-like DNA-binding domain
      cl28544
      Location:127 → 241
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

    3. NM_001337814.1 → NP_001327447.1  myb domain protein 3r-3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCZ4, A0A1I9LSC6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H1P9.1

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