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    XBAT35 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821907, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XBAT35
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT3G23280
    Locus tag
    AT3G23280
    See related
    Araport:AT3G23280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    XB3 ortholog 5 in Arabidopsis thaliana
    Summary
    Encodes a ubiquitin ligase that is a novel player in ethylene signaling involved in negatively regulating apical hook curvature, with alternative splicing controlling dual targeting to the nuclear and cytoplasmic compartments.
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    Genomic context

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    See XBAT35 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (8321329..8324477)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein Neighboring gene LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The RING-Type E3 Ligase XBAT35.2 Is Involved in Cell Death Induction and Pathogen Response. Liu H, et al. Plant Physiol, 2017 Nov. PMID 28951488, Free PMC Article
    2. XBAT35, a novel Arabidopsis RING E3 ligase exhibiting dual targeting of its splice isoforms, is involved in ethylene-mediated regulation of apical hook curvature. Carvalho SD, et al. Mol Plant, 2012 Nov. PMID 22628544
    3. ESCRT-I Component VPS23A Is Targeted by E3 Ubiquitin Ligase XBAT35 for Proteasome-Mediated Degradation in Modulating ABA Signaling. Yu F, et al. Mol Plant, 2020 Nov 2. PMID 32919085
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ESCRT-I Component VPS23A Is Targeted by E3 Ubiquitin Ligase XBAT35 for Proteasome-Mediated Degradation in Modulating ABA Signaling.
      Title: ESCRT-I Component VPS23A Is Targeted by E3 Ubiquitin Ligase XBAT35 for Proteasome-Mediated Degradation in Modulating ABA Signaling.
    2. these results highlight a novel role for XBAT35.2 in cell death induction and defense against pathogens.
      Title: The RING-Type E3 Ligase XBAT35.2 Is Involved in Cell Death Induction and Pathogen Response.
    3. XBAT35 defines a novel player in ethylene signaling involved in negatively regulating apical hook curvature
      Title: XBAT35, a novel Arabidopsis RING E3 ligase exhibiting dual targeting of its splice isoforms, is involved in ethylene-mediated regulation of apical hook curvature.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_113229.4
    NM_180297.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_566724.1
    • XB3 ortholog 5 in Arabidopsis thaliana (XBAT35); FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 4 in Arabidopsis thaliana (TAIR:AT4G14365.1); Has 26340 Blast hits to 15027 proteins in 881 species: Archae - 61; Bacteria - 2219; Metazoa - 13958; Fungi - 1495; Plants - 1186; Viruses - 392; Other Eukaryotes - 7029 (source: NCBI BLink).
    NP_850628.1
    • XB3 ortholog 5 in Arabidopsis thaliana (XBAT35); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 4 in Arabidopsis thaliana (TAIR:AT4G14365.1); Has 26382 Blast hits to 15025 proteins in 882 species: Archae - 61; Bacteria - 2221; Metazoa - 14003; Fungi - 1495; Plants - 1186; Viruses - 392; Other Eukaryotes - 7024 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8321329..8324477
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113229.4 → NP_566724.1  uncharacterized protein AT3G23280 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566724.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q4FE47, Q8L9Z0, Q94AX6, Q9LTC1
      UniProtKB/TrEMBL
      A0A178V6I9, A0A5S9XF06
      Conserved Domains (4) summary
      cd00204
      Location:15 → 128
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:15 → 106
      Ank_2; Ankyrin repeats (3 copies)
      pfam13920
      Location:409 → 456
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      sd00045
      Location:39 → 73
      ANK; ANK repeat [structural motif]

    2. NM_180297.4 → NP_850628.1  uncharacterized protein AT3G23280 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850628.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6J5
      Conserved Domains (4) summary
      cd00204
      Location:15 → 128
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:15 → 106
      Ank_2; Ankyrin repeats (3 copies)
      pfam13920
      Location:385 → 432
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      sd00045
      Location:39 → 73
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4FE47.1

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