Sec23/Sec24 protein transport family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Sec23/Sec24 protein transport family protein
Primary source: TAIR:AT4G01810
Locus tag: AT4G01810
See related: Araport:AT4G01810
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T7B11.7; T7B11_7
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 7

Sequence:: Chromosome: 4; NC_003075.7 (776414..780355, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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NM_001340336.1

Supported by ESTs:

NM_001340337.1

Supported by ESTs:

NM_116411.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within anther wall tapetum development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info
involved_in intracellular protein transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within pollen exine formation	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
part_of COPII vesicle coat	IEA Inferred from Electronic Annotation more info
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in endoplasmic reticulum exit site	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: Sec23/Sec24 protein transport family protein

NP_567217.1

Sec23/Sec24 protein transport family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT2G21630.1); Has 8290 Blast hits to 5679 proteins in 621 species: Archae - 16; Bacteria - 1021; Metazoa - 2159; Fungi - 1153; Plants - 2353; Viruses - 447; Other Eukaryotes - 1141 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

776414..780355 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_116411.4 → NP_567217.1 Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_567217.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q67ZK9, Q84WV4, Q94C84, Q9SYI1

UniProtKB/TrEMBL

A0A5S9XPE0, A0A654FL13

Conserved Domains (3) summary

PHA03247
Location:17 → 128

PHA03247; large tegument protein UL36; Provisional

COG5047
Location:196 → 826

SEC23; Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]

cd01468
Location:275 → 518

trunk_domain; trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p ...
NM_001340337.1 → NP_001329285.1 Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q67ZK9, Q84WV4, Q94C84, Q9SYI1

UniProtKB/TrEMBL

A0A5S9XPE0, A0A654FL13

Conserved Domains (3) summary

PHA03247
Location:17 → 128

PHA03247; large tegument protein UL36; Provisional

COG5047
Location:196 → 826

SEC23; Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]

cd01468
Location:275 → 518

trunk_domain; trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p ...
NM_001340336.1 → NP_001329286.1 Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q67ZK9, Q84WV4, Q94C84, Q9SYI1

UniProtKB/TrEMBL

A0A5S9XPE0, A0A654FL13

Conserved Domains (3) summary

PHA03247
Location:17 → 128

PHA03247; large tegument protein UL36; Provisional

COG5047
Location:196 → 826

SEC23; Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]

cd01468
Location:275 → 518

trunk_domain; trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p ...