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    transmembrane protein, putative (DUF3537) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825687, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF3537)
    Primary source
    TAIR:AT4G03820
    Locus tag
    AT4G03820
    See related
    Araport:AT4G03820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7M24.8; T7M24_8
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (1771833..1774532, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001340470.1
    NM_001340471.1
    NM_116620.4
    NM_202778.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF3537)
    NP_192291.2
    • Protein of unknown function (DUF3537); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT4G22270.1); Has 140 Blast hits to 140 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_974507.1
    • Protein of unknown function (DUF3537); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT4G22270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1771833..1774532 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202778.2 → NP_974507.1  transmembrane protein, putative (DUF3537) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974507.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JGB3, Q8GZ69
      Conserved Domains (1) summary
      pfam12056
      Location:31 → 418
      DUF3537; Protein of unknown function (DUF3537)

    2. NM_001340470.1 → NP_001328063.1  transmembrane protein, putative (DUF3537) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3H6, Q8GZ69

    3. NM_001340471.1 → NP_001328064.1  transmembrane protein, putative (DUF3537) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3G3, Q8GZ69

    4. NM_116620.4 → NP_192291.2  transmembrane protein, putative (DUF3537) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192291.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3LF52, Q8GZ69
      Conserved Domains (1) summary
      pfam12056
      Location:31 → 418
      DUF3537; Protein of unknown function (DUF3537)
    Nucleotide Protein
    Heading Accession and Version

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