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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828277, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT4G21880
    Locus tag
    AT4G21880
    See related
    Araport:AT4G21880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8O5.90; T8O5_90
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    17
    Sequence:
    Chromosome: 4; NC_003075.7 (11604986..11610651)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene methionine sulfoxide reductase B 2 Neighboring gene uncharacterized protein Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene zinc finger MYND domain protein Neighboring gene DNA binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341519.1
    NM_118309.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_193919.6
    • Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G04790.1); Has 19249 Blast hits to 9796 proteins in 234 species: Archae - 1; Bacteria - 14; Metazoa - 252; Fungi - 115; Plants - 18394; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11604986..11610651
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118309.7 → NP_193919.6  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193919.6

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49711
      UniProtKB/TrEMBL
      A0A178UWX3, A0A7G2EZA9
      Conserved Domains (4) summary
      PLN03218
      Location:494 → 774
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:500 → 527
      PPR; PPR repeat [structural motif]
      pfam17177
      Location:406 → 531
      PPR_long; Pentacotripeptide-repeat region of PRORP
      pfam13041
      Location:496 → 543
      PPR_2; PPR repeat family

    2. NM_001341519.1 → NP_001329309.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7C5, A0A7G2EZA9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O49711.2

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