YUC8 Flavin-binding monooxygenase family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: YUC8
Official Full Name: Flavin-binding monooxygenase family protein
Primary source: TAIR:AT4G28720
Locus tag: AT4G28720
See related: Araport:AT4G28720
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F16A16.170; F16A16_170; YUCCA 8
Summary: Auxin biosynthetic gene regulated by RVE1. Overexpression leads to suppression of bri1 phenotype.
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Genomic context

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See YUC8 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 1

Sequence:: Chromosome: 4; NC_003075.7 (14192569..14194302)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

A genome-wide association study identifies novel players in Na and Fe homeostasis in Arabidopsis thaliana under alkaline-salinity stress.
Title: A genome-wide association study identifies novel players in Na and Fe homeostasis in Arabidopsis thaliana under alkaline-salinity stress.
Local auxin biosynthesis acts downstream of brassinosteroids to trigger root foraging for nitrogen.
Title: Local auxin biosynthesis acts downstream of brassinosteroids to trigger root foraging for nitrogen.
ZEITLUPE enhances expression of PIF4 and YUC8 in the upper aerial parts of Arabidopsis seedlings to positively regulate hypocotyl elongation.
Title: ZEITLUPE enhances expression of PIF4 and YUC8 in the upper aerial parts of Arabidopsis seedlings to positively regulate hypocotyl elongation.
Results show that the transcription of CKRC2/YUC8 can be induced by cytokinin and that the phytochrome-interacting factor 4 (PIF4) is required for this upregulation.
Title: Functional roles of Arabidopsis CKRC2/YUCCA8 gene and the involvement of PIF4 in the regulation of auxin biosynthesis by cytokinin.
the overexpression of YUC8 as well as YUC9 led to strong lignification of plant aerial tissues.
Title: YUCCA8 and YUCCA9 overexpression reveals a link between auxin signaling and lignification through the induction of ethylene biosynthesis.
Both YUC8 and YUC9 are involved in auxin biosynthesis. The roots of the analyzed yuc knockout mutants displayed a reduced response to methyl jasmonate (MeJA).
Title: The jasmonic acid signaling pathway is linked to auxin homeostasis through the modulation of YUCCA8 and YUCCA9 gene expression.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_119016.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables N,N-dimethylaniline monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables NADP binding	IEA Inferred from Electronic Annotation more info
enables flavin adenine dinucleotide binding	IEA Inferred from Electronic Annotation more info
enables indole-3-pyruvate monooxygenase activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
involved_in auxin biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within auxin biosynthetic process	TAS Traceable Author Statement more info	PubMed
acts_upstream_of_or_within brassinosteroid mediated signaling pathway	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within regulation of auxin biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within response to cytokinin	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to ethylene	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within somatic embryogenesis	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Flavin-binding monooxygenase family protein

NP_194601.1

YUCCA 8 (YUC8); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: brassinosteroid mediated signaling pathway, auxin biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G43890.1); Has 11557 Blast hits to 11539 proteins in 1628 species: Archae - 52; Bacteria - 6582; Metazoa - 787; Fungi - 1560; Plants - 663; Viruses - 0; Other Eukaryotes - 1913 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

14192569..14194302

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_119016.3 → NP_194601.1 Flavin-binding monooxygenase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_194601.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9SVU0

UniProtKB/TrEMBL

A0A178V2K9, A0A5S9XWR7

Conserved Domains (1) summary

COG2072
Location:26 → 349

CzcO; Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism]