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    ArfGap/RecO-like zinc finger domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829398, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ArfGap/RecO-like zinc finger domain-containing protein
    Primary source
    TAIR:AT4G32630
    Locus tag
    AT4G32630
    See related
    Araport:AT4G32630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4D11.170; F4D11_170
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    14
    Sequence:
    Chromosome: 4; NC_003075.7 (15737918..15741741)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene copper ion binding protein Neighboring gene Enhancer of polycomb-like transcription factor protein Neighboring gene Sec23/Sec24 protein transport family protein Neighboring gene potassium channel protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001125628.4
    NM_001342162.1
    NM_001342164.1
    NM_001342165.1
    NM_119415.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ArfGap/RecO-like zinc finger domain-containing protein
    NP_001119100.1
    • ArfGap/RecO-like zinc finger domain-containing protein; FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001320115.1
    • ArfGap/RecO-like zinc finger domain-containing protein; FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 2836 Blast hits to 2808 proteins in 240 species: Archae - 0; Bacteria - 12; Metazoa - 1420; Fungi - 478; Plants - 476; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15737918..15741741
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342163.1 → NP_001328873.1  ArfGap/RecO-like zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0E2, A0A654FUY6, Q5XV62
      Conserved Domains (3) summary
      PHA03255
      Location:285 → 411
      PHA03255; BDLF3; Provisional
      PLN03131
      Location:2 → 243
      PLN03131; hypothetical protein; Provisional
      cd08838
      Location:8 → 120
      ArfGap_AGFG; ArfGAP domain of the AGFG subfamily (ArfGAP domain and FG repeat-containing proteins)

    2. NM_001342162.1 → NP_001320115.1  ArfGap/RecO-like zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0E2, A0A654FUY6, Q5XV62
      Conserved Domains (3) summary
      PHA03255
      Location:285 → 411
      PHA03255; BDLF3; Provisional
      PLN03131
      Location:2 → 243
      PLN03131; hypothetical protein; Provisional
      cd08838
      Location:8 → 120
      ArfGap_AGFG; ArfGAP domain of the AGFG subfamily (ArfGAP domain and FG repeat-containing proteins)

    3. NM_001125628.4 → NP_001119100.1  ArfGap/RecO-like zinc finger domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119100.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0E2, B3H5G3
      Conserved Domains (2) summary
      PHA03255
      Location:285 → 411
      PHA03255; BDLF3; Provisional
      pfam01412
      Location:8 → 122
      ArfGap; Putative GTPase activating protein for Arf

    4. NM_119415.6 → NP_194989.2  ArfGap/RecO-like zinc finger domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194989.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0E2, A0A654FUY6, Q5XV62
      Conserved Domains (3) summary
      PHA03255
      Location:285 → 411
      PHA03255; BDLF3; Provisional
      PLN03131
      Location:2 → 243
      PLN03131; hypothetical protein; Provisional
      cd08838
      Location:8 → 120
      ArfGap_AGFG; ArfGAP domain of the AGFG subfamily (ArfGAP domain and FG repeat-containing proteins)

    5. NM_001342165.1 → NP_001328874.1  ArfGap/RecO-like zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0E2, A0A654FUY6, Q5XV62
      Conserved Domains (3) summary
      PHA03255
      Location:285 → 411
      PHA03255; BDLF3; Provisional
      PLN03131
      Location:2 → 243
      PLN03131; hypothetical protein; Provisional
      cd08838
      Location:8 → 120
      ArfGap_AGFG; ArfGAP domain of the AGFG subfamily (ArfGAP domain and FG repeat-containing proteins)

    6. NM_001342164.1 → NP_001328872.1  ArfGap/RecO-like zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0E2, A0A654FUY6, Q5XV62
      Conserved Domains (3) summary
      PHA03255
      Location:285 → 411
      PHA03255; BDLF3; Provisional
      PLN03131
      Location:2 → 243
      PLN03131; hypothetical protein; Provisional
      cd08838
      Location:8 → 120
      ArfGap_AGFG; ArfGAP domain of the AGFG subfamily (ArfGAP domain and FG repeat-containing proteins)
    Nucleotide Protein
    Heading Accession and Version

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