U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    pre-mRNA-processing-splicing factor-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830033, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    pre-mRNA-processing-splicing factor-like protein
    Primary source
    TAIR:AT4G38780
    Locus tag
    AT4G38780
    See related
    Araport:AT4G38780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9A14.60; T9A14_60
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    24
    Sequence:
    Chromosome: 4; NC_003075.7 (18101296..18111082, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene nucleoporin (DUF3414) Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene proline-rich protein 4 Neighboring gene uncharacterized protein Neighboring gene ER lumen protein retaining receptor family protein Neighboring gene Calcium-binding EF-hand family protein Neighboring gene methylthioadenosine nucleosidase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_120038.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables U5 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables U6 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding HDA PubMed 
    enables metallopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    pre-mRNA-processing-splicing factor-like protein
    NP_195589.2
    • Pre-mRNA-processing-splicing factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosomal complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PROCN (InterPro:IPR012592), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT1G80070.1); Has 803 Blast hits to 702 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 318; Fungi - 227; Plants - 60; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18101296..18111082 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120038.5 → NP_195589.2  pre-mRNA-processing-splicing factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195589.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FAZ0
      Conserved Domains (8) summary
      cd08056
      Location:2066 → 2316
      MPN_PRP8; Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8
      COG5178
      Location:47 → 2332
      PRP8; U5 snRNP spliceosome subunit [RNA processing and modification]
      cd13838
      Location:1765 → 2015
      RNase_H_like_Prp8_IV; Ribonuclease-like Prp8 domain IV core
      pfam08082
      Location:66 → 203
      PRO8NT; PRO8NT (NUC069), PrP8 N-terminal domain
      pfam08083
      Location:394 → 794
      PROCN; PROCN (NUC071) domain
      pfam10596
      Location:1441 → 1599
      U6-snRNA_bdg; U6-snRNA interacting domain of PrP8
      pfam10597
      Location:1209 → 1341
      U5_2-snRNA_bdg; U5-snRNA binding site 2 of PrP8
      pfam10598
      Location:984 → 1075
      RRM_4; RNA recognition motif of the spliceosomal PrP8
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.