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    RNA-binding CRS1 / YhbY (CRM) domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830059, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding CRS1 / YhbY (CRM) domain protein
    Primary source
    TAIR:AT4G39040
    Locus tag
    AT4G39040
    See related
    Araport:AT4G39040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CFM4; CRM family member subfamily 4; F19H22.140; F19H22_140
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (18189012..18190608, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene glycosyl hydrolase 9B18 Neighboring gene SH3 domain-containing protein Neighboring gene MATE efflux family protein Neighboring gene ncRNA Neighboring gene Kinesin motor family protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A nuclear-encoded chloroplast protein harboring a single CRM domain plays an important role in the Arabidopsis growth and stress response. Lee K, et al. BMC Plant Biol, 2014 Apr 16. PMID 24739417, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CFM4, one of two Arabidopsis genes encoding a single CRM domain-containing protein, harbors RNA chaperone activity and plays a role in the Arabidopsis growth and stress response.[CFM4]
      Title: A nuclear-encoded chloroplast protein harboring a single CRM domain plays an important role in the Arabidopsis growth and stress response.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_120064.3
    NM_179190.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    RNA-binding CRS1 / YhbY (CRM) domain protein
    NP_195615.1
    • RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G21350.1); Has 7881 Blast hits to 5506 proteins in 1409 species: Archae - 38; Bacteria - 2320; Metazoa - 2599; Fungi - 454; Plants - 297; Viruses - 197; Other Eukaryotes - 1976 (source: NCBI BLink).
    NP_849521.1
    • RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G21350.1); Has 7808 Blast hits to 5439 proteins in 1394 species: Archae - 38; Bacteria - 2293; Metazoa - 2592; Fungi - 448; Plants - 290; Viruses - 198; Other Eukaryotes - 1949 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18189012..18190608 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179190.1 → NP_849521.1  RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849521.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UY60, F4JV86
      Conserved Domains (1) summary
      pfam01985
      Location:156 → 239
      CRS1_YhbY; CRS1 / YhbY (CRM) domain

    2. NM_120064.3 → NP_195615.1  RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195615.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UY60, A0A654FWU6, Q9SVI9
      Conserved Domains (1) summary
      pfam01985
      Location:156 → 239
      CRS1_YhbY; CRS1 / YhbY (CRM) domain
    Nucleotide Protein
    Heading Accession and Version

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