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    transmembrane protein, putative (DUF247) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824179, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF247)
    Primary source
    TAIR:AT3G50170
    Locus tag
    AT3G50170
    See related
    Araport:AT3G50170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (18601755..18603840, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF247) Neighboring gene transmembrane protein, putative (DUF247) Neighboring gene transmembrane protein, putative (DUF247) Neighboring gene transmembrane protein, putative (DUF247) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Alternative splicing affects the targeting sequence of peroxisome proteins in Arabidopsis. An C, et al. Plant Cell Rep, 2017 Jul. PMID 28352967
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084797.3
    NM_114877.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF247)
    NP_001078266.1
    • Plant protein of unknown function (DUF247); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50120.1); Has 905 Blast hits to 897 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 905; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_190586.1
    • Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50120.1); Has 1185 Blast hits to 1045 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18601755..18603840 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114877.3 → NP_190586.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190586.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VD74, A0A384LJ45, Q5XVA4, Q9S7S4
      Conserved Domains (1) summary
      pfam03140
      Location:115 → 522
      DUF247; Plant protein of unknown function

    2. NM_001084797.3 → NP_001078266.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078266.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1PEG7
      Conserved Domains (1) summary
      pfam03140
      Location:115 → 399
      DUF247; Plant protein of unknown function
    Nucleotide Protein
    Heading Accession and Version

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