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    RPL23AB ribosomal protein L23AB [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824694, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPL23AB
    Official Full Name
    ribosomal protein L23AB
    Primary source
    TAIR:AT3G55280
    Locus tag
    AT3G55280
    See related
    Araport:AT3G55280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RIBOSOMAL PROTEIN L23A2; ribosomal protein L23AB; RPL23A2
    Summary
    60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA
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    Genomic context

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    See RPL23AB in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (20500234..20501738)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene beta-hexosaminidase 1 Neighboring gene mitogen-activated protein kinase phosphatase 1 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis paralogous genes RPL23aA and RPL23aB encode functionally equivalent proteins. Xiong W, et al. BMC Plant Biol, 2020 Oct 8. PMID 33032526, Free PMC Article
    2. Sequence context for transcription and translation of the Arabidopsis RPL23aA and RPL23aB paralogs. McIntosh KB, et al. Genome, 2011 Sep. PMID 21883051
    3. Transcript profiling demonstrates absence of dosage compensation in Arabidopsis following loss of a single RPL23a paralog. Degenhardt RF, et al. Planta, 2008 Sep. PMID 18566829
    4. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    5. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084824.1
    NM_001084825.1
    NM_115386.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to high light intensity IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to oxidative stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 

    General protein information

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    Preferred Names
    ribosomal protein L23AB
    NP_001078293.1
    • ribosomal protein L23AB (RPL23AB); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, intracellular, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AA (TAIR:AT2G39460.2); Has 2614 Blast hits to 2614 proteins in 920 species: Archae - 307; Bacteria - 1151; Metazoa - 410; Fungi - 142; Plants - 120; Viruses - 0; Other Eukaryotes - 484 (source: NCBI BLink).
    NP_001078294.1
    • ribosomal protein L23AB (RPL23AB); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, intracellular, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AA (TAIR:AT2G39460.2); Has 2615 Blast hits to 2615 proteins in 920 species: Archae - 307; Bacteria - 1160; Metazoa - 408; Fungi - 134; Plants - 120; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).
    NP_191088.1
    • ribosomal protein L23AB (RPL23AB); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, intracellular, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AA (TAIR:AT2G39460.2); Has 2614 Blast hits to 2614 proteins in 920 species: Archae - 307; Bacteria - 1151; Metazoa - 410; Fungi - 142; Plants - 120; Viruses - 0; Other Eukaryotes - 484 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20500234..20501738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115386.3 → NP_191088.1  ribosomal protein L23AB [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191088.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M3C3
      UniProtKB/TrEMBL
      A0A178VJM6, A0A5S9XLS3, A0A654FH68
      Conserved Domains (1) summary
      PTZ00191
      Location:31 → 154
      PTZ00191; 60S ribosomal protein L23a; Provisional

    2. NM_001084825.1 → NP_001078294.1  ribosomal protein L23AB [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078294.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJM6, A8MS83
      Conserved Domains (3) summary
      PTZ00191
      Location:31 → 148
      PTZ00191; 60S ribosomal protein L23a; Provisional
      pfam03939
      Location:31 → 57
      Ribosomal_L23eN; Ribosomal protein L23, N-terminal domain
      cl00326
      Location:66 → 148
      Ribosomal_L23; Ribosomal protein L23

    3. NM_001084824.1 → NP_001078293.1  ribosomal protein L23AB [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078293.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M3C3
      UniProtKB/TrEMBL
      A0A178VJM6, A0A5S9XLS3, A0A654FH68
      Conserved Domains (1) summary
      PTZ00191
      Location:31 → 154
      PTZ00191; 60S ribosomal protein L23a; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M3C3.1

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