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    SnRK1.3 SNF1-related protein kinase 1.3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833940, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SnRK1.3
    Official Full Name
    SNF1-related protein kinase 1.3
    Primary source
    TAIR:AT5G39440
    Locus tag
    AT5G39440
    See related
    Araport:AT5G39440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUL8.120; MUL8_120; SNF1-related protein kinase 1.3
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    Genomic context

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    See SnRK1.3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (15781907..15784699)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CDC2C Neighboring gene DUF1336 family protein, putative (DUF1336) Neighboring gene F-box family protein Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A dual function of SnRK2 kinases in the regulation of SnRK1 and plant growth. Belda-Palazón B, et al. Nat Plants, 2020 Nov. PMID 33077877
    2. The Arabidopsis SR45 Splicing Factor, a Negative Regulator of Sugar Signaling, Modulates SNF1-Related Protein Kinase 1 Stability. Carvalho RF, et al. Plant Cell, 2016 Aug. PMID 27436712, Free PMC Article
    3. Regulatory Functions of Cellular Energy Sensor SNF1-Related Kinase1 for Leaf Senescence Delay through ETHYLENE- INSENSITIVE3 Repression. Kim GD, et al. Sci Rep, 2017 Jun 9. PMID 28600557, Free PMC Article
    4. Quantitative phosphoproteomics of protein kinase SnRK1 regulated protein phosphorylation in Arabidopsis under submergence. Cho HY, et al. J Exp Bot, 2016 Apr. PMID 27029354, Free PMC Article
    5. The hybrid four-CBS-domain KINβγ subunit functions as the canonical γ subunit of the plant energy sensor SnRK1. Ramon M, et al. Plant J, 2013 Jul. PMID 23551663, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A dual function of SnRK2 kinases in the regulation of SnRK1 and plant growth.
      Title: A dual function of SnRK2 kinases in the regulation of SnRK1 and plant growth.
    2. ur findings enlighten that an evolutionary conserved cellular energy sensor SnRK1 plays a role in fine-tuning of organ senescence progression to avoid sudden death during the last step of leaf growth and development.
      Title: Regulatory Functions of Cellular Energy Sensor SNF1-Related Kinase1 for Leaf Senescence Delay through ETHYLENE- INSENSITIVE3 Repression.
    3. Data demonstrate that SR45 regulates alternative splicing of the Arabidopsis 5PTase13 gene, which encodes an inositol polyphosphate 5-phosphatase previously shown to interact with and regulate the stability of SnRK1 in vitro, thus providing a mechanistic link between SR45 function and the modulation of degradation of the SnRK1 energy sensor in response to sugars.
      Title: The Arabidopsis SR45 Splicing Factor, a Negative Regulator of Sugar Signaling, Modulates SNF1-Related Protein Kinase 1 Stability.
    4. quantitative phosphoproteomics of protein phosphorylation when under submergence
      Title: Quantitative phosphoproteomics of protein kinase SnRK1 regulated protein phosphorylation in Arabidopsis under submergence.
    5. Phosphorylation of bZIP63 by SnRK1 changed its dimerization preference, thereby affecting target gene expression and ultimately primary metabolism.
      Title: SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
    6. A new classification of plant FCD genes as a convenient and reliable tool to predict regulatory partners for the SnRK1 energy sensor and novel FCD gene functions.
      Title: The hybrid four-CBS-domain KINβγ subunit functions as the canonical γ subunit of the plant energy sensor SnRK1.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNF1-related protein kinase 1.3
    NP_198760.1
    • SNF1-related protein kinase 1.3 (SnRK1.3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, Snf1-like AMPK (InterPro:IPR015741), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SNF1 kinase homolog 11 (TAIR:AT3G29160.2); Has 134559 Blast hits to 132128 proteins in 4775 species: Archae - 156; Bacteria - 15425; Metazoa - 49691; Fungi - 13625; Plants - 32691; Viruses - 538; Other Eukaryotes - 22433 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15781907..15784699
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123306.1 → NP_198760.1  SNF1-related protein kinase 1.3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198760.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FLZ3, Q9ZRA0
      UniProtKB/TrEMBL
      A0A5S9Y9V0, A0A654G6H9
      Conserved Domains (3) summary
      cd12122
      Location:388 → 491
      AMPKA_C; C-terminal regulatory domain of 5'-AMP-activated protein kinase (AMPK) alpha catalytic subunit
      cd14335
      Location:292 → 332
      UBA_SnRK1_plant; UBA domain found in the plant sucrose nonfermenting-1-related kinase (SnRK1) proteins
      cd14079
      Location:16 → 270
      STKc_AMPK_alpha; Catalytic domain of the Alpha subunit of the Serine/Threonine Kinase, AMP-activated protein kinase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FLZ3.1

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