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    WRKY48 WRKY DNA-binding protein 48 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835012, updated on 18-Sep-2024

    Summary

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    Official Symbol
    WRKY48
    Official Full Name
    WRKY DNA-binding protein 48
    Primary source
    TAIR:AT5G49520
    Locus tag
    AT5G49520
    See related
    Araport:AT5G49520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48; ATWRKY48; K6M13.6; K6M13_6; WRKY DNA-binding protein 48
    Summary
    Encodes WRKY48, a member of the WRKY Transcription Factor. WRKY48 is a stress- and pathogen-induced transcriptional activator that represses plant basal defense.
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    Genomic context

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    See WRKY48 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (20090648..20093346)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Signal recognition particle, SRP54 subunit protein Neighboring gene prefoldin 3 Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. WRKY48 negatively regulates plant acclimation to a combination of high light and heat stress. Balfagón D, et al. Plant J, 2024 Mar. PMID 38315509
    2. Stress- and pathogen-induced Arabidopsis WRKY48 is a transcriptional activator that represses plant basal defense. Xing DH, et al. Mol Plant, 2008 May. PMID 19825553
    3. The WRKY superfamily of plant transcription factors. Eulgem T, et al. Trends Plant Sci, 2000 May. PMID 10785665
    4. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. WRKY48 negatively regulates plant acclimation to a combination of high light and heat stress.
      Title: WRKY48 negatively regulates plant acclimation to a combination of high light and heat stress.
    2. WRKY48 is a negative regulator of Pseudomonas Sryngae (a bacterial pathogen), growth in Arabidopsis.
      Title: Stress- and pathogen-induced Arabidopsis WRKY48 is a transcriptional activator that represses plant basal defense.
    Submit: New GeneRIF Correction

    General gene information

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    NM_124329.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WRKY DNA-binding protein 48
    NP_199763.1
    • WRKY DNA-binding protein 48 (WRKY48); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 23 (TAIR:AT2G47260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20090648..20093346
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124329.3 → NP_199763.1  WRKY DNA-binding protein 48 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199763.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FGZ4
      UniProtKB/TrEMBL
      A0A654GA00
      Conserved Domains (1) summary
      smart00774
      Location:220 → 277
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FGZ4.1

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