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    cPT6 Undecaprenyl pyrophosphate synthetase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835993, updated on 18-Sep-2024

    Summary

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    Official Symbol
    cPT6
    Official Full Name
    Undecaprenyl pyrophosphate synthetase family protein
    Primary source
    TAIR:AT5G58782
    Locus tag
    AT5G58782
    See related
    Araport:AT5G58782
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtcPT6; cis-prenyltransferase 6
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    Genomic context

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    See cPT6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (23738099..23739587, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene damaged DNA binding 2 Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of dehydrodolichyl diphosphate synthase of Arabidopsis thaliana, a key enzyme in dolichol biosynthesis. Cunillera N, et al. FEBS Lett, 2000 Jul 21. PMID 10908715
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_125266.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables dehydrodolichyl diphosphate synthase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables transferase activity, transferring alkyl or aryl (other than methyl) groups IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within dolichol biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Undecaprenyl pyrophosphate synthetase family protein
    NP_568883.1
    • Undecaprenyl pyrophosphate synthetase family protein; FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: dolichol biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: ovule, embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: Undecaprenyl pyrophosphate synthetase family protein (TAIR:AT5G58780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23738099..23739587 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345322.1 → NP_001332129.1  Undecaprenyl pyrophosphate synthetase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BG36, A0A654GCP9

    2. NM_125266.4 → NP_568883.1  Undecaprenyl pyrophosphate synthetase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568883.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GY03, Q8LFW9, Q9LUY2
      UniProtKB/TrEMBL
      A0A654GCP9
      Conserved Domains (1) summary
      cd00475
      Location:60 → 280
      Cis_IPPS; Cis (Z)-Isoprenyl Diphosphate Synthases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GY03.1

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