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    ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836129, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ankyrin repeat family protein
    Primary source
    TAIR:AT5G60070
    Locus tag
    AT5G60070
    See related
    Araport:AT5G60070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MGO3.5; MGO3_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (24190264..24192894, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein Neighboring gene ncRNA Neighboring gene F-box SKIP23-like protein (DUF295) Neighboring gene Protein kinase superfamily protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_125400.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat family protein
    NP_200815.1
    • ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24190264..24192894 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125400.3 → NP_200815.1  ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200815.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQG8, A0A654GCQ1, Q9LVG7
      Conserved Domains (4) summary
      COG0666
      Location:111 → 313
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:176 → 208
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:112 → 202
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:361 → 477
      PGG; Domain of unknown function
    Nucleotide Protein
    Heading Accession and Version

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