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    Proteasome component (PCI) domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831413, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Proteasome component (PCI) domain protein
    Primary source
    TAIR:AT5G15610
    Locus tag
    AT5G15610
    See related
    Araport:AT5G15610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20K14.220; T20K14_220
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (5079458..5082288)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene longifolia1 Neighboring gene uncharacterized protein Neighboring gene SPIRAL1-like4 Neighboring gene F-box/RNI-like superfamily protein Neighboring gene COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_121565.4
    NM_180495.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Proteasome component (PCI) domain protein
    NP_197065.1
    • Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT3G02200.2); Has 426 Blast hits to 426 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 114; Plants - 66; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
    NP_850826.1
    • Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT3G02200.2); Has 694 Blast hits to 694 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 189; Plants - 98; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5079458..5082288
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121565.4 → NP_197065.1  Proteasome component (PCI) domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197065.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y4P9, Q9LF21
      Conserved Domains (2) summary
      pfam01399
      Location:258 → 359
      PCI; PCI domain
      pfam18005
      Location:392 → 420
      eIF3m_C_helix; eIF3 subunit M, C-terminal helix

    2. NM_180495.2 → NP_850826.1  Proteasome component (PCI) domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850826.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPF3, A0A5S9Y4P9, Q0WSE9
      Conserved Domains (2) summary
      pfam01399
      Location:258 → 359
      PCI; PCI domain
      pfam18005
      Location:363 → 391
      eIF3m_C_helix; eIF3 subunit M, C-terminal helix
    Nucleotide Protein
    Heading Accession and Version

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