U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    EIF2 BETA eukaryotic translation initiation factor 2 beta subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832216, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EIF2 BETA
    Official Full Name
    eukaryotic translation initiation factor 2 beta subunit
    Primary source
    TAIR:AT5G20920
    Locus tag
    AT5G20920
    See related
    Araport:AT5G20920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMB1401; embryo defective 1401; eukaryotic translation initiation factor 2 beta subunit; F22D1.90; F22D1_90
    Summary
    protein synthesis initiation factor eIF2 beta
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EIF2 BETA in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (7094649..7097145, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene jasmonate-zim-domain protein 12 Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene Glycosyl hydrolase family protein Neighboring gene DUF3148 family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Chang IF, et al. Proteomics, 2009 Jun. PMID 19452453, Free PMC Article
    2. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    3. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    4. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001085141.1
    NM_122100.4
    NM_203088.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables translation initiation factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    part_of eukaryotic translation initiation factor 2 complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    eukaryotic translation initiation factor 2 beta subunit
    NP_001078610.1
    • eukaryotic translation initiation factor 2 beta subunit (EIF2 BETA); FUNCTIONS IN: protein binding, translation initiation factor activity; INVOLVED IN: translational initiation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT3G07920.1); Has 1323 Blast hits to 1320 proteins in 358 species: Archae - 271; Bacteria - 0; Metazoa - 350; Fungi - 277; Plants - 186; Viruses - 4; Other Eukaryotes - 235 (source: NCBI BLink).
    NP_197592.1
    • eukaryotic translation initiation factor 2 beta subunit (EIF2 BETA); FUNCTIONS IN: protein binding, translation initiation factor activity; INVOLVED IN: translational initiation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT3G07920.1); Has 1325 Blast hits to 1322 proteins in 359 species: Archae - 272; Bacteria - 0; Metazoa - 350; Fungi - 278; Plants - 186; Viruses - 4; Other Eukaryotes - 235 (source: NCBI BLink).
    NP_974817.1
    • eukaryotic translation initiation factor 2 beta subunit (EIF2 BETA); FUNCTIONS IN: protein binding, translation initiation factor activity; INVOLVED IN: translational initiation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT3G07920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7094649..7097145 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122100.4 → NP_197592.1  eukaryotic translation initiation factor 2 beta subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197592.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K6W6, Q41969, Q8L7Q3, Q9C5N7
      UniProtKB/TrEMBL
      A0A178UDQ8, A0A5S9Y6K7
      Conserved Domains (1) summary
      smart00653
      Location:140 → 249
      eIF2B_5; domain present in translation initiation factor eIF2B and eIF5

    2. NM_203088.2 → NP_974817.1  eukaryotic translation initiation factor 2 beta subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974817.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDQ8, A0A5S9Y6K7
      Conserved Domains (1) summary
      smart00653
      Location:139 → 248
      eIF2B_5; domain present in translation initiation factor eIF2B and eIF5

    3. NM_001085141.1 → NP_001078610.1  eukaryotic translation initiation factor 2 beta subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078610.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K6W6, Q41969, Q8L7Q3, Q9C5N7
      UniProtKB/TrEMBL
      A0A178UDQ8, A0A5S9Y6K7
      Conserved Domains (1) summary
      smart00653
      Location:140 → 249
      eIF2B_5; domain present in translation initiation factor eIF2B and eIF5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q41969.3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools