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    RLM3 disease resistance protein (TIR-NBS class) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827407, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RLM3
    Official Full Name
    disease resistance protein (TIR-NBS class)
    Primary source
    TAIR:AT4G16990
    Locus tag
    AT4G16990
    See related
    Araport:AT4G16990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4525W; FCAALL.324; RESISTANCE TO LEPTOSPHAERIA MACULANS 3
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    Genomic context

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    See RLM3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (9558571..9565569)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene disease resistance protein (TIR-NBS-LRR class) Neighboring gene Protein kinase superfamily protein Neighboring gene arabinogalactan-protein family Neighboring gene uncharacterized protein Neighboring gene neurofilament heavy protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RLM3, a TIR domain encoding gene involved in broad-range immunity of Arabidopsis to necrotrophic fungal pathogens. Staal J, et al. Plant J, 2008 Jul. PMID 18397376
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036575.1
    NM_001341173.1
    NM_001341174.1
    NM_001341175.1
    NM_001341176.1
    NM_001341177.1
    NM_001341178.1
    NM_001341179.1
    NM_001341180.1
    NM_001341181.1
    NM_001341182.1
    NM_001341183.1
    NM_001341184.1
    NM_001341185.1
    NM_001341186.1
    NM_001341187.1
    NM_117803.4
    NM_179068.2
    NM_179069.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables NAD+ nucleotidase, cyclic ADP-ribose generating IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    NOT involved_in jasmonic acid and ethylene-dependent systemic resistance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of defense response by callose deposition IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    disease resistance protein (TIR-NBS class)
    NP_001031652.1
    • RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16960.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001319972.1
    • RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 6697 Blast hits to 6313 proteins in 180 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 6691; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001319973.1
    • RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_193432.4
    • RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 6513 Blast hits to 6293 proteins in 179 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 6507; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_849400.2
    • RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 5933 Blast hits to 5673 proteins in 173 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5931; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9558571..9565569
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341183.1 → NP_001319973.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H733

    2. NM_001341184.1 → NP_001329882.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXS5, A0A1P8B928

    3. NM_001341185.1 → NP_001329883.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZA0, A0A1P8B920

    4. NM_001341182.1 → NP_001319972.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JNC3, Q0WKX9, Q3EA02, Q682W8, Q9FT77, Q9SUK2
      UniProtKB/TrEMBL
      A0A178UZA0

    5. NM_001341186.1 → NP_001329880.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXM6, A0A1P8B934

    6. NM_001341187.1 → NP_001329881.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZA0, A0A1P8B919

    7. NM_001341173.1 → NP_001329874.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZA0, A0A1P8B927

    8. NM_001341174.1 → NP_001329875.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXS5, A0A1P8B928

    9. NM_001341175.1 → NP_001329873.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZA0, A0A1P8B920

    10. NM_179068.2 → NP_849399.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849399.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JNC3, Q0WKX9, Q3EA02, Q682W8, Q9FT77, Q9SUK2
      UniProtKB/TrEMBL
      A0A178UZA0
      Conserved Domains (3) summary
      cd00009
      Location:182 → 323
      AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
      pfam01582
      Location:9 → 171
      TIR; TIR domain
      pfam08381
      Location:537 → 592
      BRX; Transcription factor regulating root and shoot growth via Pin3

    11. NM_001341176.1 → NP_001329878.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZA0, F4JNC4

    12. NM_001341177.1 → NP_001329879.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZA0, F4JNC4

    13. NM_001341178.1 → NP_001329876.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B945

    14. NM_001341179.1 → NP_001329877.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZA0, A0A1P8B927

    15. NM_001036575.1 → NP_001031652.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031652.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZA0, F4JNC4
      Conserved Domains (2) summary
      cd00009
      Location:24 → 165
      AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
      pfam08381
      Location:379 → 434
      BRX; Transcription factor regulating root and shoot growth via Pin3

    16. NM_179069.2 → NP_849400.2  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849400.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZA0
      Conserved Domains (2) summary
      cd00009
      Location:24 → 165
      AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
      pfam08381
      Location:379 → 434
      BRX; Transcription factor regulating root and shoot growth via Pin3

    17. NM_117803.4 → NP_193432.4  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193432.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXM6
      Conserved Domains (3) summary
      cd00009
      Location:182 → 323
      AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
      pfam01582
      Location:9 → 171
      TIR; TIR domain
      pfam08381
      Location:537 → 591
      BRX; Transcription factor regulating root and shoot growth via Pin3

    18. NM_001341180.1 → NP_001329871.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B945

    19. NM_001341181.1 → NP_001329872.1  disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZA0, F4JNC4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FT77.1

    Gene LinkOut

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