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    VSR5 VACUOLAR SORTING RECEPTOR 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818059, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VSR5
    Official Full Name
    VACUOLAR SORTING RECEPTOR 5
    Primary source
    TAIR:AT2G34940
    Locus tag
    AT2G34940
    See related
    Araport:AT2G34940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    binding protein of 80 kDa 3;2; BP80-3;2; F19I3.17; F19I3_17; VACUOLAR SORTING RECEPTOR 3;2; VACUOLAR SORTING RECEPTOR 5; VSR3;2
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    Genomic context

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    See VSR5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Sequence:
    Chromosome: 2; NC_003071.7 (14740348..14743417)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-RELATED 42 Neighboring gene miscRNA Neighboring gene disease resistance family protein / LRR family protein Neighboring gene tRNA-Thr Neighboring gene cationic amino acid transporter 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A family of Arabidopsis plasma membrane receptors presenting animal beta-integrin domains. Laval V, et al. Biochim Biophys Acta, 1999 Nov 16. PMID 10561538
    2. AtVPS45 complex formation at the trans-Golgi network. Bassham DC, et al. Mol Biol Cell, 2000 Jul. PMID 10888666, Free PMC Article
    3. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    4. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_129047.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein targeting to vacuole TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Golgi transport complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    VACUOLAR SORTING RECEPTOR 5
    NP_181040.1
    • VACUOLAR SORTING RECEPTOR 5 (VSR5); FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 6 (TAIR:AT1G30900.1); Has 10681 Blast hits to 5483 proteins in 264 species: Archae - 0; Bacteria - 175; Metazoa - 9320; Fungi - 5; Plants - 378; Viruses - 0; Other Eukaryotes - 803 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14740348..14743417
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129047.4 → NP_181040.1  VACUOLAR SORTING RECEPTOR 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181040.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64758
      UniProtKB/TrEMBL
      A0A178VYD0, A0A384KPH5, A0A5S9X4A4, Q0WTC8
      Conserved Domains (2) summary
      cd00054
      Location:512 → 540
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cl28883
      Location:53 → 174
      PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64758.1

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