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    EDA18 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818057, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EDA18
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT2G34920
    Locus tag
    AT2G34920
    See related
    Araport:AT2G34920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo sac development arrest 18; F19I3.15; F19I3_15
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    Genomic context

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    See EDA18 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (14728027..14731255, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CTP synthase family protein Neighboring gene Transcription factor GTE6 Neighboring gene root hair specific protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CLAVATA3/ESR-RELATED 42 Neighboring gene miscRNA Neighboring gene disease resistance family protein / LRR family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana. Boavida LC, et al. Genetics, 2009 Apr. PMID 19237690, Free PMC Article
    2. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001336534.1
    NM_129045.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo sac development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_181038.2
    • embryo sac development arrest 18 (EDA18); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryo sac development, pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has 2267 Blast hits to 2247 proteins in 225 species: Archae - 3; Bacteria - 29; Metazoa - 1450; Fungi - 60; Plants - 428; Viruses - 44; Other Eukaryotes - 253 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14728027..14731255 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129045.2 → NP_181038.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181038.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EYW9, F4IIX4
      Conserved Domains (1) summary
      pfam13920
      Location:595 → 643
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    2. NM_001336534.1 → NP_001324447.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B041, A0A654EYW9
    Nucleotide Protein
    Heading Accession and Version

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