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    MEE27 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818053, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MEE27
    Official Full Name
    Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
    Primary source
    TAIR:AT2G34880
    Locus tag
    AT2G34880
    See related
    Araport:AT2G34880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19I3.11; F19I3_11; JMJ15; Jumonji domain-containing protein 15; maternal effect embryo arrest 27; PKDM7C
    Summary
    A maternally expressed imprinted gene.
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    Genomic context

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    See MEE27 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (14711880..14716634, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene DnaJ/Hsp40 cysteine-rich domain superfamily protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene CTP synthase family protein Neighboring gene Transcription factor GTE6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Over-expression of histone H3K4 demethylase gene JMJ15 enhances salt tolerance in Arabidopsis. Shen Y, et al. Front Plant Sci, 2014. PMID 25009544, Free PMC Article
    2. Overexpression of a histone H3K4 demethylase, JMJ15, accelerates flowering time in Arabidopsis. Yang H, et al. Plant Cell Rep, 2012 Jul. PMID 22555401
    3. Wide-scale screening of T-DNA lines for transcription factor genes affecting male gametophyte development in Arabidopsis. Reňák D, et al. Sex Plant Reprod, 2012 Mar. PMID 22101548
    4. A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana. Boavida LC, et al. Genetics, 2009 Apr. PMID 19237690, Free PMC Article
    5. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables histone H3K4me/H3K4me2/H3K4me3 demethylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within_negative_effect negative regulation of gene expression, epigenetic IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of flower development IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to salt IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
    NP_181034.1
    • maternal effect embryo arrest 27 (MEE27); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: embryo development ending in seed dormancy, regulation of transcription, pollen development; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2); Has 2070 Blast hits to 1543 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 1091; Fungi - 459; Plants - 363; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14711880..14716634 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129041.1 → NP_181034.1  Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181034.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64752
      UniProtKB/TrEMBL
      A0A5S9X4J1, A0A654F097
      Conserved Domains (5) summary
      smart00541
      Location:643 → 687
      FYRN; FY-rich domain, N-terminal region
      smart00545
      Location:60 → 101
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00542
      Location:693 → 781
      FYRC; FY-rich domain, C-terminal region
      pfam02373
      Location:294 → 410
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:514 → 566
      zf-C5HC2; C5HC2 zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64752.1

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